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PINdb specifications

Information


Unique identifier OMICS_19174
Name PINdb
Alternative name Proteins Interacting in the Nucleus database
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Taxon


  • Plants and Fungi
    • Saccharomyces cerevisiae
  • Primates
    • Homo sapiens

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Publication for Proteins Interacting in the Nucleus database

PINdb citations

 (2)
library_books

A Role for Eosinophils in the Intestinal Immunity against Infective Ascaris suum Larvae

2013
PLoS Negl Trop Dis
PMCID: 3605247
PMID: 23556022
DOI: 10.1371/journal.pntd.0002138

[…] d cDNA synthesis kit, starting from 1 µg of RNA.Primers for the real time PCR reactions were designed with the Primer3 software , or taken from the PIN database (http://199.133.11.115/fmi/iwp/cgi?-db=PINdb&-loadframes). For a list of primers, see . PCRs were run using Fast SYBR Green Master Mix (Applied Biosystems) on an AB StepOnePlus Real-Time PCR System. Primer specificity was confirmed by obse […]

library_books

Posterior Association Networks and Functional Modules Inferred from Rich Phenotypes of Gene Perturbations

2012
PLoS Comput Biol
PMCID: 3386165
PMID: 22761558
DOI: 10.1371/journal.pcbi.1002566

[…] enotypes’ are posterior probabilities for all possible gene pairs belonging to each one of the three mixture components. We first build an adjacency matrix of protein-protein interactions (PPIs) from PINdb (version 2011-06-17), a high-quality literature-curated database of nuclear protein complexes . In total, the matrix includes 9226 PPIs between 966 proteins. Mapping the 332 chromatin factors to […]


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PINdb institution(s)
Molecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY, USA

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