PINE-NMR specifications

Information


Unique identifier OMICS_06815
Name PINE-NMR
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PINE-NMR

PINE-NMR in publications

 (4)
PMCID: 5738438
PMID: 29263320
DOI: 10.1038/s41467-017-02308-3

[…] ple resonance experiments was carried out on the 13c, 15n-labeled npm tail domain (hnca, hncacb, hnco, hn(co)ca, cbca(co)nh, hn(ca)co, and hbha(co)nh). resonances were assigned using a combination of pine nmr server predictions and manual inspection of the spectra. csps upon nacl and histone titration were calculated using the following equation:1\documentclass[12pt]{minimal} \usepackage{amsma […]

PMCID: 4061012
PMID: 24937088
DOI: 10.1371/journal.pone.0097198

[…] identified signals from additional backbone and side chain atoms. all peaks identified by automation were carefully validated by visual inspection. peak lists for each spectrum were exported to the pine-nmr server , which yielded automated resonance assignments for all but four of the backbone spin systems. the assignment probabilities were high for all but one residue, which was at 50%. […]

PMCID: 3106192
PMID: 21511715
DOI: 10.1093/bioinformatics/btr200

[…] (peak-picking of noe data enabled by restriction of shift assignments) software package described here bridges this gap and is meant to be used with an automated resonance assignment package such as pine-nmr introduced earlier by our group ()., ponderosa (supplementary fig. s1a) accepts resonance assignments in popular file formats (sparky; t.d. goddard and d. g. kneller, sparky 3; university […]

PMCID: 2705709
PMID: 19130299
DOI: 10.1007/s10969-008-9057-4

[…] analysis) then carries out probabilistic secondary structure determination., the separate data analysis steps (pistachio, lacs, and pecan) have now been fully integrated into a pipeline, called pine-nmr. pine handles input data from a wide variety of nmr experiments, including hcch tocsy (important for side chain assignments). pine is freely available from a web server […]


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PINE-NMR institution(s)
National Magnetics Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, WI, USA

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