PiNGO protocols

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PiNGO specifications

Information


Unique identifier OMICS_02281
Name PiNGO
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for PiNGO

PiNGO in pipelines

 (2)
2014
PMCID: 4055453
PMID: 24718810
DOI: 10.3892/mmr.2014.2137

[…] value for the connectivity degree of nodes (proteins in the network) >2. gene ontology (go) functional annotation and enrichment analysis of genes in the resulting modules was performed using the pingo plugin in cytoscape () with a threshold p<0.05 based on a hypergeometric test., information on the biological pathways in which the module-related degs are involved was retrieved […]

2013
PMCID: 3626861
PMID: 23410028
DOI: 10.1186/1755-8794-6-5

[…] view of the loci was presented using flash gviewer web tool (http://gmod.org/wiki/flashgviewer/). david bioinformatics resources 6.7 was used for pathway enrichment analysis. cytoscape plug-in pingo 1.11 was employed for protein-network-based prediction of novel candidate genes. relevant protein-protein interactions were confirmed and visualized using the string database (version 9.0)., […]


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PiNGO in publications

 (16)
PMCID: 5919928
PMID: 29700429
DOI: 10.1038/s41598-018-25079-3

[…] temperature is less than −2 °c.figure 4, in the studied lake (280 m long and 100 m wide, maximum depth around 6 m) the brines were located only within a deep trough in correspondence of which a pingo like feature (plf) occurs (fig. ). plf is a frost mound that intruded the lake ice surface reaching a maximum height of 45 cm and extending within an area of approximately of 500 m2. […]

PMCID: 5793083
DOI: 10.3390/md16010035

[…] watarucerra, brunoo’brien, kyliechan, cheong xino’neil, gregorychang, ching-yaooh, dongchanchang, chun-juohta, shinjichang, ko-tungojika, makotochang, long-senokada, masahirochang, shui-pingo'keefe, barry r.chao, louis kuopingokino, tatsufumichappell, keitholiveira, paula alexandra martins dechen, guoxunonduka, toshimitsuchen, haixiaopatz, tillchen, hongweiorchard, sandrachen, […]

PMCID: 5489687
PMID: 28639616
DOI: 10.1038/ncomms15872

[…] gas is over-pressured to enable it to build its own gas-migration pathways (like gas chimneys). one such possibility by which submerged thaw-lake taliks could serve as gas-migration paths is via a pingo-like structure, which might form through the taliks., summarizing our results, we suggest that subsea permafrost degradation in the near-shore zone of the esas is determined by a combination […]

PMCID: 5018818
PMID: 27616183
DOI: 10.1038/srep33158

[…] shallow perennially ice-covered lake south of 70°s in an ice-free area of victoria land, antarctica. for the first time, we also imaged, by means of ground penetrating radar data, the existence of a pingo-like-feature (plf) formed by the extrusion of brines, which has also been confirmed by borehole evidence. those brines are fed by an underground talik external to the lake basin, enhancing […]

PMCID: 4927643
PMID: 27268116
DOI: 10.1016/j.bjm.2016.04.006

[…] to their region in minas gerais, and the most important varieties are produced in serro, canasta, cerrado and araxá., , serro minas cheese is usually made from raw bovine milk with addition of the “pingo”, a natural fermentation starter originated from whey collected from successful cheese production from the previous batch., there is a clear risk of pathogen transmission in the production […]


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PiNGO institution(s)
Department of Bioengineering, University of California San Diego, La Jolla, CA, USA

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