PiNGO statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PiNGO

Tool usage distribution map

This map represents all the scientific publications referring to PiNGO per scientific context
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Associated diseases


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PiNGO specifications


Unique identifier OMICS_02281
Name PiNGO
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for PiNGO

PiNGO citations


Module based functional pathway enrichment analysis of a protein protein interaction network to study the effects of intestinal microbiota depletion in mice

PMCID: 4055453
PMID: 24718810
DOI: 10.3892/mmr.2014.2137

[…] off value for the connectivity degree of nodes (proteins in the network) >2. Gene Ontology (GO) functional annotation and enrichment analysis of genes in the resulting modules was performed using the PiNGO plugin in Cytoscape () with a threshold P<0.05 based on a hypergeometric test. […]


Pivotal role of the muscle contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies

BMC Med Genomics
PMCID: 3626861
PMID: 23410028
DOI: 10.1186/1755-8794-6-5

[…] A new cohort of 43 candidate genes (Additional file : Table S7) was predicted by PiNGO 1.11 [], which is a Cytoscape plug-in (see Methods) []. The question we tried to address was which first-neighbor genes significantly interact with the original cohort of 179 literature-collecte […]


CytoITMprobe: a network information flow plugin for Cytoscape

BMC Res Notes
PMCID: 3514294
PMID: 22587372
DOI: 10.1186/1756-0500-5-237

[…] that provide complementary functionality. For instance, output ITMs can be related to terms from controlled vocabularies such as Gene Ontology [] using functional enrichment analysis plugins such as PinGO [] or our own recently released CytoSaddleSum[]. The graph-theoretic structure of ITM subnetworks can be analyzed using a variety of algorithms such as MCODE [] or GraphletCounter [,].The archit […]

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PiNGO institution(s)
Department of Bioengineering, University of California San Diego, La Jolla, CA, USA

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