PinSnps specifications

Information


Unique identifier OMICS_11408
Name PinSnps
Interface Web user interface
Restrictions to use None
Input data Input can be (i) a protein identifier, provided as UniProt accession number to search for a single protein or a sub-network of interactors; (ii) dbSNP entries to query specific SNPs; (iii) COSMIC entries to search whithin a cancer tissue type.
Output data The interactive user-interface comprises: 3D view of a single protein or protein complexes; sequence alignments (query sequence and 3D structure sequence) showing SNPs, PTMs and functional sites as checkboxes selectable by the user and labeled on the interactive rotatable 3D structure.
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Franca Fraterli <>

Publication for PinSnps

PinSnps institution(s)
Randall Division of Cell and Molecular Biophysics, King’s College London, London, UK
PinSnps funding source(s)
This work was supported by BBSRC (BB/G017190/1) and MRC (MR/L01257X/1).

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