PORT specifications

Unique identifier:
OMICS_20225
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
SAM,BAM,FASTA,FASTQ
Output format:
SAM,BAM
Programming languages:
Perl, Python
Version:
0.8.5
Maintained:
Yes
Name:
Pipeline of RNA-Seq Transformations
Interface:
Command line interface
Input data:
Some raw sequences reads, alignment files, a gene information file and a genome file.
Output data:
A normalized file for exonmappers, intronmappers, intergenicmappers and exon inconsistent, a normalized file for genemappers, some feature count spreadsheets, normalization factor statistics and normalized coverage and junction files.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

versioning

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PORT distribution

download

PORT support

Documentation

Additional information

https://github.com/itmat/normalization/wiki

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