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PipeOnline specifications

Information


Unique identifier OMICS_15130
Name PipeOnline
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages Perl
Database management system MySQL
Computer skills Basic
Stability No
Maintained No

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Publication for PipeOnline

PipeOnline citations

 (2)
library_books

Transcriptional Analysis of Resistance to Low Temperatures in Bermudagrass Crown Tissues

2015
PMCID: 4562713
PMID: 26348040
DOI: 10.1371/journal.pone.0136433

[…] screened for inserts by pcr amplification followed by agarose gel electrophoresis, eliminating those with insert sizes less than 200 bp. inserts were sequenced, vector sequences trimmed using the pipeonline 3.0 processing and functional sorting software []. a total of 3845 high quality sequences were obtained. eight libraries were created including forward and reverse subtracted libraries […]

library_books

Comparison of gene expression signatures of diamide, H2O2 and menadione exposed Aspergillus nidulans cultures – linking genome wide transcriptional changes to cellular physiology

2005
PMCID: 1352360
PMID: 16368011
DOI: 10.1186/1471-2164-6-182

[…] by the student's t-test [,]. only the probability levels of p ≤ 5 % were regarded as indicative of statistical significance., est sequence processing and functional data sorting were performed using pipeonline version 2.0 [,]. homology search was carried out in two independent ways: (i) via translated contig sequence query versus protein in ncbi blast (blastx) [] and (ii) via translated orf […]


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PipeOnline institution(s)
Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA; School of Mechanical and Aerospace Engineering, Oklahoma State University, Stillwater, OK, USA
PipeOnline funding source(s)
This work was supported by a grant from the Plant Genome Research division of the National Science Foundation (grant no. 9813360).

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