PIQA protocols

PIQA specifications


Unique identifier OMICS_01067
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format HTML report
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained No


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Publication for PIQA

PIQA IN pipeline

PMCID: 5143363
PMID: 28018607
DOI: 10.1038/hgv.2016.41

[…] to hybridize and capture the dna fragments. after hybridization, the captured dna was sequenced on illumina hiseq2500 analyzers (illumina, sandiego, ca, usa) and read on quality analysis pipeline (piqa).12 we used bwa v0.5913 to align the sequence reads to the human genome reference (build 37) and removed duplicated reads from the subsequent analyses. sequences variants were identified […]

PIQA institution(s)
Department of Computer Science, University of Houston, Houston, TX, USA; Department of Physics, Universidad de Guadalajara, Jalisco, México; Eureka Genomics Corp; Houston, TX, USA
PIQA funding source(s)
Department of Homeland Security Science and Technology Directorate (award NBCHC070063); Texas Learning and Computation Center; training fellowship from the Keck Center Biomedical Discovery Training Program of the Gulf Coast Consortia (NIH Grant No. 1 T90 DA022885-02); CONACYT, Mexico for scholarship support

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