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piRNA cluster database specifications

Information


Unique identifier OMICS_10752
Name piRNA cluster database
Alternative name piRNA cluster db
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline David Rosenkranz

Publications for piRNA cluster database

piRNA cluster database citations

 (4)
library_books

Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High and Low motile sperm populations

2017
BMC Genomics
PMCID: 5209821
PMID: 28052756
DOI: 10.1186/s12864-016-3394-7

[…] and LM fractions, respectively. Apart from two clusters (Cluster14 and Cluster24) of the HM fraction, all the other clusters overlap clusters reported to be expressed in bull testis libraries at the piRNA cluster database (http://www.smallrnagroup.uni-mainz.de/piRNAclusterDB.html, []). 74.5% and 85.0% of the unique putative piRNA sequences mapping within clusters in the HM and LM fractions, respe […]

call_split

Paternal pachytene piRNAs are not required for fertilization, embryonic development and sperm mediated epigenetic inheritance in mice

2016
PMCID: 5625633
PMID: 28983410
DOI: 10.1093/eep/dvw021
call_split See protocol

[…] The Miwi- and Mili-bound piRNA cluster datasets were downloaded from the piRNA Cluster Database (http://www.smallrnagroup.uni-mainz.de/piRNAclusterDB.html) [], and used as the reference piRNA cluster datasets. The sncRNA-Seq reads were mapped to the reference datasets usin […]

library_books

Piwi proteins and piRNAs in mammalian oocytes and early embryos: From sample to sequence

2015
Genom Data
PMCID: 4583685
PMID: 26484274
DOI: 10.1016/j.gdata.2015.06.026

[…] ownload at http://www.smallrnagroup-mainz.de/data/proTRAC_Roovers-et-al.zip as these results are not attached to the original study. Selected datasets from this GEO Series have also been added to the piRNA cluster database that can be accessed under the following URL: http://www.smallrnagroup-mainz.de/piRNAclusterDB.html. […]

library_books

Sex Biased miRNAs in Gonad and Their Potential Roles for Testis Development in Yellow Catfish

2014
PLoS One
PMCID: 4168133
PMID: 25229553
DOI: 10.1371/journal.pone.0107946

[…] gi-bin/RNAfold.cgi) with the default folding criteria. The detailed mapping process was performed as previously described . Then, the nohit reads were blasted against the piRNA database download from piRNA cluster-database (http://www.uni-mainz.de/FB/Biologie/Anthropologie/492_ENG_HTML.php) and piRNA Bank (http://pirnabank.ibab.ac.in/request.html) and to identify homology piRNA. No more than one m […]

Citations

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piRNA cluster database institution(s)
Institute of Anthropology, Johannes Gutenberg University, Mainz, Germany
piRNA cluster database funding source(s)
Intramural research funding program MAIFOR from the University Medical Centre Mainz

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