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Piwi-interacting RNA detection software tools | Genome annotation

Many computational tools have been proposed during the two last decades for predicting piRNAs, which are molecules with important role in post-transcriptional gene regulation. However, these tools are mostly based on only one feature that is…
piRNApredictor
Desktop

piRNApredictor

Predicts piRNA by integrating twenty-three discriminative features.…

Predicts piRNA by integrating twenty-three discriminative features. piRNApredictor is constructing on a genetic algorithm-based weighted ensemble method (GA-WE). It is able to produce good…

piRPred
Desktop

piRPred

Provides a multiple kernel-based support vector machine (SVM) algorithm to…

Provides a multiple kernel-based support vector machine (SVM) algorithm to predict piRNAs. piRPred combines heterogeneous types of piRNA features. It allows to use heterogeneous features, each kernel…

LuoEtAl2016
Desktop

LuoEtAl2016

Differentiates transposon-derived piRNAs from non-piRNAs. This method is based…

Differentiates transposon-derived piRNAs from non-piRNAs. This method is based on the utilization of sequential and physicochemical features to proceed. The features concerned are spectrum profile,…

IpiRId
Web
Desktop

IpiRId

Predicts piRNAs or ncRNAs. IpiRId is based on the Multiple Kernel Learning…

Predicts piRNAs or ncRNAs. IpiRId is based on the Multiple Kernel Learning (MKL) method. It combines several kernels representing different types of features, deals with the heterogeneity of the…

Piano
Desktop

Piano piRNA annotation

Allows users to predict piRNAs using piRNA-transposon interaction information.…

Allows users to predict piRNAs using piRNA-transposon interaction information. Piano classifies real piRNAs and pseudo piRNAs thank to a support vector machine (SVM) method. It was applied to detect…

2L-piRNA
Web

2L-piRNA

Identifies Piwi-Interacting RNAs. 2L-piRNA is useful for genome analysis and…

Identifies Piwi-Interacting RNAs. 2L-piRNA is useful for genome analysis and drug development, particularly in those areas involved with non-coding RNAs. It integrates physicochemical properties of…

V-ELMpiRNAPred
Web

V-ELMpiRNAPred

Recognizes human piRNAs. V-ELMpiRNAPred is composed of a series of features…

Recognizes human piRNAs. V-ELMpiRNAPred is composed of a series of features with 80 dimension called short sequence motifs (SSM) to make its predictions. It is based on a machine learning algorithm…

Pibomd
Web

Pibomd

Captures the real features of piRNA and other RNA sequences. Pibomd is based on…

Captures the real features of piRNA and other RNA sequences. Pibomd is based on a support vector machine (SVM) algorithm that allows motif discovery for piRNA. It enables prediction of piRNAs in…

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