piRPred statistics

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Associated diseases

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piRPred specifications

Information


Unique identifier OMICS_20435
Name piRPred
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A set of sequences.
Output data A list of 1 or 0 if the sequence is a piRNA.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Fariza Tahi <>

Additional information


https://evryrna.ibisc.univ-evry.fr/evryrna/piRPred/

Publication for piRPred

piRPred in publication

PMCID: 5751586
PMID: 29297285
DOI: 10.1186/s12859-017-1896-1

[…] method to identify pirna clusters without assuming any parametric distribution model. besides, the sequence-based approach can further incorporate distinctive features to detect pirnas. for example, pirpred [] integrates both the features of k-mer string and clustering locus based on multiple kernel fusion., in this paper, we propose a novel sequence-based pirna detection algorithm, called […]


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piRPred institution(s)
IBISC EA 4526, UEVE/Genopole, IBGBI, Evry, France; Genethon, Evry, France
piRPred funding source(s)
Supported by the Association Francaise contre les Myopathies (AFM).

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