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PiSITE specifications

Information


Unique identifier OMICS_02962
Name PiSITE
Restrictions to use None
Maintained Yes

Publication for PiSITE

PiSITE citations

 (4)
library_books

Bioinformatics and Moonlighting Proteins

2015
Front Bioeng Biotechnol
PMCID: 4478894
PMID: 26157797
DOI: 10.3389/fbioe.2015.00090

[…] There are different algorithms and programs for structure prediction and modeling that can yield hints on functional sites in protein sequences (Pisite, Phyre, I-tasser, SiteEngine…). We have applied two of them: Pisite (Higurashi et al., ) and Phyre (Kelley and Sternberg, ) to the moonlighting proteins of the MultitaskProtDB database. In the […]

library_books

Protein protein Interaction Network Prediction by Using Rigid Body Docking Tools: Application to Bacterial Chemotaxis

2014
Protein Pept Lett
PMCID: 4440392
PMID: 23855669
DOI: 10.2174/09298665113209990066

[…] oteins is in agreement with our findings given in (Fig. ). It should also be noted that both docking tools predict CheY undergoes dimerization. Moreover, sequence homology based interlog search using PiSite [] also suggests that dimerization of CheY is likely. […]

library_books

Drug Like Protein–Protein Interaction Modulators: Challenges and Opportunities for Drug Discovery and Chemical Biology

2014
Mol Inform
PMCID: 4160817
PMID: 25254076
DOI: 10.1002/minf.201400040

[…] tein–Protein Interaction (MIPS),[] the host-pathogen interaction database (HPIDB),[] IntAct,[] BioGRID,[] STRING.[] Structural information can be found at the Protein Data Bank (PDB) and for instance PISite collects interface data from the PDB.[] Structures of domain-domain interactions are available from 3did,[] and iPfam,[] while a spatial classification of 3D protein domain interaction database […]

library_books

Specialized Dynamical Properties of Promiscuous Residues Revealed by Simulated Conformational Ensembles

2013
J Chem Theory Comput
PMCID: 3827836
PMID: 24250278
DOI: 10.1021/ct400486p

[…] rotein where both backbone and side chains are included, it is still faster than MD simulations.The interaction data on each protein of our SFull data set were derived from a structural PPI database, PiSite, where partners from all the PDB complexes involving homologues within a high (>90%) sequence identity family are mapped onto a family representative. Structural PPI databases generally contain […]

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PiSITE institution(s)
Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo, Japan

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