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PiSQRD specifications


Unique identifier OMICS_09929
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data PDB code or PDB file
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline T. Aleksiev <>

Publications for PiSQRD

PiSQRD citations


Structural determinants of Sleeping Beauty transposase activity

PMCID: 5010145
PMID: 27401040
DOI: 10.1038/mt.2016.110

[…] effect on the structure (δδg > 0, p << 0.05, t-tests; )., although three conserved domains were identified in the sb sequence, an analysis of the flexibility of the structure with the pisqrd tool and also recent analyses of the mos1 and sb transposase , indicate that the structure can be split into two large regions; the relatively flexible n-terminal part of the protein […]


Mechanical and Assembly Units of Viral Capsids Identified via Quasi Rigid Domain Decomposition

PMCID: 3828136
PMID: 24244139
DOI: 10.1371/journal.pcbi.1003331

[…] and the considerations of provide a justification for the use of the coarse-grained description for the polyoma capsid., the subdivision of viral capsids into quasi-rigid domains is based on the pisqrd strategy introduced in refs. , . the approach relies on the notion that for a genuine rigid-body the modulus of the distance of any two points remains constant as the body is moved in space., […]


Elucidating the Interacting Domains of Chandipura Virus Nucleocapsid Protein

PMCID: 3830837
PMID: 24288532
DOI: 10.1155/2013/594319

[…] this direction, we have generated the structure of chpv n protein by homology modeling using swiss-model workspace and accelrys discovery studio client 2.55 and mapped the domains of n protein using pisqrd. the interactions of n protein fragments with other proteins were determined by zdock rigid-body docking method and validated by yeast two-hybrid and elisa. the study revealed a unique binding […]

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PiSQRD institution(s)
Scuola Internazionale Superiore di Studi Avanzati and eLab, Trieste, Italy

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