PISwap statistics

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Citations per year

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Popular tool citations

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Associated diseases

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PISwap specifications

Information


Unique identifier OMICS_04882
Name PISwap
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for PISwap

PISwap in publications

 (2)
PMCID: 5430463
PMID: 28424527
DOI: 10.1038/s41598-017-01085-9

[…] the first pass and then simply performing a maximum-weight bipartite matching, whereas mode 2 performs the two passes. on our datasets, only mode 1 returned alignments for all ppi network pairs., piswap first identifies an optimal global alignment based purely on sequence data. then, it uses the intuition that biologically conserved interactions can compensate for mapping proteins whose […]

PMCID: 3311098
PMID: 22536895
DOI: 10.1186/1471-2105-13-S3-S11

[…] ppi networks by adopting seed-expanding method. since lna has several drawbacks as mentioned above, recent research has focused on gna., path [], ga [], natalie [], netalignbp, netalignmr [], and piswap [] all focus on gna and all of them only address the pairwise alignment problem. they formulate the pairwise alignment problem into an objective function which combines the two goals of gna: […]


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PISwap institution(s)
Computer Science and Artificial Intelligence Laboratory and Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Computer Science and Department of Industrial Engineering and Engineering Management, National Tsing Hua University, Hsinchu, Taiwan

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