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pizzly specifications


Unique identifier OMICS_19925
Name pizzly
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
License BSD 2-clause “Simplified” License, GNU General Public License version 3.0
Computer skills Advanced
Version 0.37.3
Stability Stable
Source code URL https://codeload.github.com/pmelsted/pizzly/tar.gz/v0.37.3
Maintained Yes




No version available



  • person_outline Pall Melsted

Publication for pizzly

pizzly citation


Genome Informatics 2016

Genome Biol
PMCID: 5240446
PMID: 28093077
DOI: 10.1186/s13059-016-1135-5

[…] sequins (http://www.sequin.xyz/). these standards act as a ground truth to measure the accuracy and precision of transcriptome sequencing. pall melsted (university of iceland, iceland) presented pizzly, a new tool to detect the gene fusions that often occur in cancer from transcriptome data, approximately 100 times faster than established methods. annalaura vacca (university of edinburgh, […]

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pizzly institution(s)
Faculty of Industrial Engineering, Mechanical Engineering, and Computer Science, University of Iceland, Iceland; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA; Graduate Program in Computational Biology, University of California, Berkeley, CA, USA; Department of Computer Science, University of California, Berkeley, CA, USA; Innovative Genomics Initiative, University of California, Berkeley, CA, USA; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA

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