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Associated diseases

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pkaPS specifications

Information


Unique identifier OMICS_05932
Name pkaPS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for pkaPS

pkaPS in publications

 (13)
PMCID: 5680263
PMID: 29123182
DOI: 10.1038/s41598-017-15087-0

[…] comparative studies of available phosphorylation databases (kinexus phosphonet, phosphositeplus, phosida) and trials of in silico phosphorylation site prediction programs (netphosk 1.0, networkin, pkaps, gps 2.1, ppsp, scansite,) were used to predict pka substrate sites. considering direct enzyme-substrate interactions when a serine was preceded by an arginine at −3 position, serine 436 […]

PMCID: 5431798
PMID: 28500286
DOI: 10.1038/s41598-017-01999-4

[…] from individual species. in response to this, we performed clustal alignment of all three species to identify shared intracellular regions, then utilized phosphorylation site prediction algorithms (pkaps; netphosk1.0; kinasephos2.0) to identify potential sites of pka and/or pkc phosphorylation shared across all three species. potential sites identified by all three algorithms […]

PMCID: 5295241
PMID: 28106838
DOI: 10.3390/md15010021

[…] from mobyle portal []. phosphorylation sites were predicted by netphos 3.1 server [] and protein kinase a (pka) and protein kinase c (pkc) sites were predicted with kinasephos 2.0 server [] and pkaps server []. all statistical analyses were executed with r 3.2.2 []. the validation of the optimal reference gene for the normalization of real-time pcr data was performed using the normfinder […]

PMCID: 5226813
PMID: 28076424
DOI: 10.1371/journal.pone.0170097

[…] were confirmed by sequencing (department of biochemistry, university of cambridge, uk)., potential pka phosphorylation sites on htrpa1 were sought using gps2.1.1 [], netphosk [], scansite 3 [], pkaps [], and kinasephos 2.0 []. potential phosphorylation sites were targeted when they were identified with high probability by one or more of these packages., hek293t cells were transfected using […]

PMCID: 5053351
PMID: 27716202
DOI: 10.1186/s12934-016-0564-x

[…] phosphorylation sites (consensus rrxs) in its amino acid sequence: at ser 36 (rrts) and ser 237 (rrgs), with a 1.71 and 0.97 score, respectively, in the prediction of phosphorylation calculated by pkaps server []. it has been demonstrated that pyruvate kinase pyk1 of saccharomyces cerevisiae is phosphorylated in vivo and in vitro by pka [, ]., pga1 prevents premature conidiation, as inferred […]


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pkaPS institution(s)
IMP - Research Institute of Molecular Pathology, Vienna, Austria

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