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PLABQTL specifications

Information


Unique identifier OMICS_07098
Name PLABQTL
Alternative name PLant Breeding And Biology QTL
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Albrecht Melchinger

Publication for PLant Breeding And Biology QTL

PLABQTL citations

 (27)
library_books

Genome Based Prediction of Time to Curd Induction in Cauliflower

2018
Front Plant Sci
PMCID: 5807883
PMID: 29467774
DOI: 10.3389/fpls.2018.00078

[…] onstructed with MapMaker 3 by simultaneous multipoint-analysis using the Haldane function (; ). On basis of the results of parameterization trials, QTL analyses were conducted on LAR, S, and T0 using PlabQTL 1.2 (). Composite interval mapping (CIM) based on multiple regression with co-factors was applied (; ; ; ). The LOD threshold to define a significant QTL was 2.5. The linkage map was drawn wit […]

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Mapping QTLs Controlling Flowering Time and Important Agronomic Traits in Pearl Millet

2017
Front Plant Sci
PMCID: 5742331
PMID: 29326729
DOI: 10.3389/fpls.2017.01731
call_split See protocol

[…] /EXP 3.0 program (Lander et al., ) using Haldane mapping function.Correlation analysis was performed with PROC CORR in SAS to obtain phenotypic association among traits. QTL analysis was performed by PLABQTL software (Utz and Melchinger, ) through composite interval mapping (CIM) method with 2 cM walk speed to detect putative QTLs on the linkage groups. A minimum log of the odds (LOD) threshold of […]

library_books

Mapping Quantitative Trait Loci Controlling High Iron and Zinc Content in Self and Open Pollinated Grains of Pearl Millet [Pennisetum glaucum (L.) R. Br.]

2016
Front Plant Sci
PMCID: 5120122
PMID: 27933068
DOI: 10.3389/fpls.2016.01636

[…] .5 ppm, while the remaining QTLs were environment specific (Table ; Figure ).Only one QTL, detected in both environments on LG3, was identified in the across-environment analyses. The QTL-ANOVA using PlabQTL showed significant QEI, with adjusted R2 = 18.9% and adjusted additive effect = 8.3 ppm. This same single QTL was also detected by QTLNetwork (Table ) but this analysis failed to detect signif […]

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QTLs Associated with Agronomic Traits in the Cutler × AC Barrie Spring Wheat Mapping Population Using Single Nucleotide Polymorphic Markers

2016
PLoS One
PMCID: 4981373
PMID: 27513976
DOI: 10.1371/journal.pone.0160623
call_split See protocol

[…] wheat [, , ]. For each SNP, chromosome arm was inferred from the draft sequence of the hexaploid wheat [].Composite interval mapping (CIM) was performed on the least square means of each trait using PLABQTL version 1.2 [] with the following parameters: a minimum LOD score of 3.0, automatic cofactor selection, walking speed of 1 cM, a model to determine additive effects at individual QTL and addit […]

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QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance

2016
PLoS One
PMCID: 4980037
PMID: 27508500
DOI: 10.1371/journal.pone.0160749
call_split See protocol

[…] a consensus linkage map of all SNPs was constructed from the population specific maps using BioMercator v.40 []. Composite interval mapping (CIM) was performed on the mean values of each entry using PLABQTL version 1.2 [] with the following parameters: a minimum LOD score of 2.5, automatic cofactor selection, walking speed of 1 cM, a model to determine additive effects at individual QTL and addit […]

library_books

Organ Specific Quantitative Genetics and Candidate Genes of Phenylpropanoid Metabolism in Brassica oleracea

2016
Front Plant Sci
PMCID: 4729930
PMID: 26858727
DOI: 10.3389/fpls.2015.01240

[…] ea with a total distance of 891.4 cM and a marker density of 3.2 cM/marker. Quantitative trait locus mapping was carried out through a composite interval mapping method (Zeng, ) by using the software PLABQTL (version 1.2) (Utz, ). Individual analyses were carried out for each trait and plant developmental stage (leaf, flower bud and seed). Empirical thresholds were build with permutation tests, wi […]

Citations

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PLABQTL institution(s)
Institut fuer Pflanzenzuechtung, Saatgutforschung und Populationsgenetik, Universitaet Hohenheim, Stuttgart, Germany

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