PLACNET specifications

Information


Unique identifier OMICS_11487
Name PLACNET
Alternative names PLAsmid Constellation NETwork, PLACNETw
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The input of PLACNET is a set of contigs and one or more files with the mapping of the reads against the contigs.
Input format SAM
Output data A set of files, easily opened on Cytoscape software or other network tools.
Biological technology Illumina, Life Technologies, Pacific Biosciences, Roche, Oxford Nanopore
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Beta
Maintained Yes

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Documentation


Maintainers


  • person_outline Ferndo de la Cruz <>
  • person_outline Luis Vielva <>

Information


Unique identifier OMICS_11487
Name PLACNET
Alternative names PLAsmid Constellation NETwork, PLACNETw
Interface Web user interface
Restrictions to use None
Input data pair-end read datasets.
Input format GZIP FASTA
Computer skills Basic
Maintained Yes

Download


Documentation


Maintainers


  • person_outline Ferndo de la Cruz <>
  • person_outline Luis Vielva <>

Publications for PLAsmid Constellation NETwork

PLACNET institution(s)
Departamento de Ingeniería de Comunicaciones, Universidad de Cantabria, Santander, Spain; Plataforma de Genómica y Bioinformática, Centro de Investigación Biomédica de La Rioja (CIBIR), Logroño, Spain; Departamento de Microbiología, Instituto de Investigación Sanitaria Ramón y Cajal (IRYCIS), Madrid, Spain; Departamento de Biología Molecular, Universidad de Cantabria and Instituto de Biomedicina y Biotecnología de Cantabria (Universidad de Cantabria- CSIC), Santander, Spain
PLACNET funding source(s)
Supported by the Spanish Ministry of Economy and Competitivity (BFU2011-26608) and the European Seventh Framework Program (612146/FP7-ICT-2013-10).

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