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PLANEX specifications


Unique identifier OMICS_06062
Alternative name PLAnt co-EXpression database
Restrictions to use None
Maintained Yes

Publication for PLAnt co-EXpression database

PLANEX citations


Human substantia nigra and ventral tegmental area involvement in computing social error signals during the ultimatum game

PMCID: 5716153
PMID: 28981876
DOI: 10.1093/scan/nsx097

[…] Research Institute. High-resolution (0.5×0.5×1 mm) T1-weighted structural images were acquired using an MP-RAGE pulse sequence and functional images were acquired using a high-resolution (1.5× 1.5 in plane×1.9 mm) cardiac-gated echo-planar imaging sequence. To facilitate the localization of the SN and VTA, a proton-density weighted image was also acquired. The borders of SN and VTA were visually i […]


A reference floral transcriptome of sexual and apomictic Paspalum notatum

BMC Genomics
PMCID: 5399859
PMID: 28431521
DOI: 10.1186/s12864-017-3700-z

[…] wed the identification of putative Arabidopsis orthologs corresponding to the differentially expressed P. notatum candidates. Then, these sequences were used to interrogate the co-expression database PLANEX ( in order to reveal molecular networks, which alteration could be involved in apomictic reproduction. Discovery of common ontology te […]


Learning from Co expression Networks: Possibilities and Challenges

Front Plant Sci
PMCID: 4825623
PMID: 27092161
DOI: 10.3389/fpls.2016.00444

[…] vealing conservation and divergence in the regulation of genes.At the moment, several integrative platforms are available to enquire, display and compare co-expression networks. Examples of these are PLANEX (Yim et al., ), ComPLex (Netotea et al., ), CoExpNetViz (Tzfadia et al., ), PLAZA (Proost et al., ) and the “NetworkComparer” pipeline on the PlaNet platform (Mutwil et al., ) that integrates g […]


Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network Based Analysis

PLoS One
PMCID: 4747569
PMID: 26859686
DOI: 10.1371/journal.pone.0148771

[…] have been identified that are associated with a specific biological process in plants. In addition, several web-based databases for plant gene co-expression networks, including LegumeGRN [], CoP [], PLANEX [], PLEXdb [] and CressExpress [], have been developed to enable the visualization of gene-gene interrelationships, gene-specific expression profiles across stress conditions and data mining of […]


MIrExpress: A Database for Gene Coexpression Correlation in Immune Cells Based on Mutual Information and Pearson Correlation

J Immunol Res
PMCID: 4735977
PMID: 26881263
DOI: 10.1155/2015/140819

[…] sts without bioinformatics background to retrieve the gene coexpression information effectively and efficiently. For such, there in the field of plant biology are many coexpression databases, such as PLANEX [], ATTED-II [], Cop [], TEGD [], and PlantCART [], the information in which was derived from large-scale gene expression data. Besides those, several coexpression databases peculiarly for mamm […]

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PLANEX institution(s)
Department of Plant Biotechnology, Dongguk Univ-Seoul, Seoul, Korea

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