plantiSMASH specifications
- Unique identifier:
- OMICS_14355
- Interface:
- Web user interface
- Input data:
- Plant genome sequences.
- Output data:
- Gene cluster outline and comparative genomics, gene expression heatmap, intercluster coexpression hiveplot, coexpression ego network.
- Computer skills:
- Basic
- Maintained:
- Yes
- Name:
- plant antibiotics & Secondary Metabolite Analysis Shell
- Restrictions to use:
- None
- Input format:
- FASTA+GFF3
- Output format:
- HTML
- Stability:
- Stable
- Plants
plantiSMASH support
Documentation
- Documentation: http://plantismash.secondarymetabolites.org/help.html
Maintainer
- Marnix Medema <>
forum
No open topic.
Credits
Publications
-
(Kaustsar, 2016)
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.
BioRxiv.
DOI: 10.1101/083535
Institution(s)
Bioinformatics Group, Wageningen University, Wageningen, Netherlands; Teknik Informatika, Universitas Lampung, Lampung, Indonesia; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark; Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich, UK
Funding source(s)
This work was supported by the Graduate School for Experimental Plant Sciences (EPS), by a grant from the Novo Nordisk Foundation; by the UK Biotechnological and Biological Sciences Research Council (BBSRC) Institute Strategic Programme Grant ‘Understanding and Exploiting Plant and Microbial Metabolism’ (BB/J004561/1), the John Innes Foundation, the joint Engineering and Physical Sciences Research Council/ BBSRC-funded OpenPlant Synthetic Biology Research Centre grant BB/L014130/1 and a National Institutes of Health Genome to Natural Products Network award U101GM110699. It is supported by VENI grant 863.15.002 from The Netherlands Organization for Scientific Research (NWO), and by the Genome to Natural Products Network.
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