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plantiSMASH classification

Plants

plantiSMASH specifications

Interface:: Web user interface
Input data:: Plant genome sequences.
Output data:: Gene cluster outline and comparative genomics, gene expression heatmap, intercluster coexpression hiveplot, coexpression ego network.
Computer skills:: Basic
Maintained:: Yes

Restrictions to use:: None
Input format:: FASTA+GFF3
Output format:: HTML
Stability:: Stable

plantiSMASH support

Documentation

Documentation: http://plantismash.secondarymetabolites.org/help.html

Maintainer

Marnix Medema <>

Credits

Publications

Publications contributions

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(Kaustsar, 2016) plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters. BioRxiv.
DOI: 10.1101/083535

Institution(s)

Bioinformatics Group, Wageningen University, Wageningen, Netherlands; Teknik Informatika, Universitas Lampung, Lampung, Indonesia; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark; Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich, UK

Funding source(s)

This work was supported by the Graduate School for Experimental Plant Sciences (EPS), by a grant from the Novo Nordisk Foundation; by the UK Biotechnological and Biological Sciences Research Council (BBSRC) Institute Strategic Programme Grant ‘Understanding and Exploiting Plant and Microbial Metabolism’ (BB/J004561/1), the John Innes Foundation, the joint Engineering and Physical Sciences Research Council/ BBSRC-funded OpenPlant Synthetic Biology Research Centre grant BB/L014130/1 and a National Institutes of Health Genome to Natural Products Network award U101GM110699. It is supported by VENI grant 863.15.002 from The Netherlands Organization for Scientific Research (NWO), and by the Genome to Natural Products Network.