Plant MetGenMAP statistics

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Protocols

Plant MetGenMAP specifications

Information


Unique identifier OMICS_19114
Name Plant MetGenMAP
Interface Web user interface
Restrictions to use None
Input data Normalized and processed expression and metabolite profile data.
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa
    • Zea mays

Documentation


Maintainers


  • person_outline Zhangjun Fei
  • person_outline Plant MetGenMAP Team

Publication for Plant MetGenMAP

Plant MetGenMAP citations

 (30)
library_books

Tomato AUXIN RESPONSE FACTOR 5 regulates fruit set and development via the mediation of auxin and gibberellin signaling

2018
Sci Rep
PMCID: 5813154
PMID: 29445121
DOI: 10.1038/s41598-018-21315-y

[…] s and further analyzed by enrichment of gene ontology (GO) terms and the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. GO analysis was performed on differentially expressed genes using the Plant MetGenMAP database. Pathway enrichment analysis was performed using the KEGG database. […]

library_books

Transcriptomics and Alternative Splicing Analyses Reveal Large Differences between Maize Lines B73 and Mo17 in Response to Aphid Rhopalosiphum padi Infestation

2017
Front Plant Sci
PMCID: 5641392
PMID: 29067035
DOI: 10.3389/fpls.2017.01738

[…] , ). To investigate whether the volatile terpene biosynthesis pathways respond to R. padi feeding, we screened for the expression levels of 11 TPS genes in B73 and Mo17 that had been annotated by the Plant MetGenMAP to be 10 sesquiterpene synthases (TPS1 to 10) and one monoterpene synthase (GRMZM2G030583) (Joung et al., ). Among these 11 TPS genes inspected, TPS8 (GRMZM2G038153) was induced (1.93- […]

call_split

A transcriptome analysis of two grapevine populations segregating for tendril phyllotaxy

2017
PMCID: 5506248
PMID: 28713572
DOI: 10.1038/hortres.2017.32
call_split See protocol

[…] To relate the biological significance of the discovered DEGs, gene ontology (GO) enrichment was conducted using Plant MetGenMAP. The resulting list of GO terms and their P values were reduced to a representative GO terms by clustering similar terms and projected into an MDS plot, as implemented by a web-based G […]

library_books

Transcriptomic Analysis of Avocado Hass (Persea americana Mill) in the Interaction System Fruit Chitosan Colletotrichum

2017
Front Plant Sci
PMCID: 5462954
PMID: 28642771
DOI: 10.3389/fpls.2017.00956

[…] ggests that the fruit induced its defense system by regulating several genes in short times just after treatment with chitosan.To identify and assign enriched Gene Ontology (GO) terms to our dataset (Plant MetGenMap, Ontology Process, multi-test correction FDR, p_value < 0.05), all of the differentially up- and down-regulated unigenes showing sequence homology to A. thaliana (DNA sequences defined […]

library_books

The quest for epigenetic regulation underlying unisexual flower development in Cucumis melo

2017
PMCID: 5460419
PMID: 28592995
DOI: 10.1186/s13072-017-0132-6

[…] n has been chosen to define significant differential expression. CummeRbund v2.0.0 was used for visualization of differential analysis []. Functional annotation using GO terms was performed using the Plant MetGenMAP tool []. All p values are shown in Additional file : Table VIII. […]

library_books

Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle Associated Genes

2017
Sci Rep
PMCID: 5397871
PMID: 28425468
DOI: 10.1038/srep46163

[…] en overripe and ripe fruits were identified with the DESeq package. GO terms enriched in the set of differentially expressed genes (adjusted p value < 0.05) and altered pathways were identified using Plant MetGenMAP. […]

Citations

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Plant MetGenMAP institution(s)
Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, USA; Plant Molecular and Cellular Biology Program, Horticultural Sciences, University of Florida, Gainesville, FL, USA; United States Department of Agriculture-Agricultural Research Service Robert W. Holley Center for Agriculture and Health, Ithaca, NY, USA
Plant MetGenMAP funding source(s)
Supported by the National Science Foundation (grant nos. DBI–0501778, DBI–0605659, and DBI–082061).

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