Plant MetGenMAP statistics

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Plant MetGenMAP specifications

Information


Unique identifier OMICS_19114
Name Plant MetGenMAP
Interface Web user interface
Restrictions to use None
Input data Normalized and processed expression and metabolite profile data.
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa
    • Zea mays

Documentation


Maintainers


  • person_outline Zhangjun Fei <>
  • person_outline Plant MetGenMAP Team <>

Publication for Plant MetGenMAP

Plant MetGenMAP in publications

 (29)
PMCID: 5813154
PMID: 29445121
DOI: 10.1038/s41598-018-21315-y

[…] and further analyzed by enrichment of gene ontology (go) terms and the kyoto encyclopedia of genes and genomes (kegg) database. go analysis was performed on differentially expressed genes using the plant metgenmap database. pathway enrichment analysis was performed using the kegg database., anova statistical analyses were performed on all data using spss 15.0 (p < 0.01) and data were tested […]

PMCID: 5641392
PMID: 29067035
DOI: 10.3389/fpls.2017.01738

[…] et al., )., for gene ontology (go) analysis, we obtained the go terms for each maize gene using the agrigo web service (du et al., ), and wego (ye et al., ) was used for go functional annotation; plant metgenmap (joung et al., ) was used for pathway enrichment analysis. sets of genes showing a similar pattern of transcription were assumed to be functionally correlated. transcription patterns […]

PMCID: 5506248
PMID: 28713572
DOI: 10.1038/hortres.2017.32

[…] all libraries. degs were declared significant at the fdr ⩽0.05 and a 1.5-fold change., to relate the biological significance of the discovered degs, gene ontology (go) enrichment was conducted using plant metgenmap. the resulting list of go terms and their p values were reduced to a representative go terms by clustering similar terms and projected into an mds plot, as implemented by a web-based […]

PMCID: 5462954
PMID: 28642771
DOI: 10.3389/fpls.2017.00956

[…] from the control samples (fruit not treated with chitosan and not inoculated at their respective sampling times)., to identify enriched go terms (process; up-regulated and down-regulated genes) plant metgenmap (ontology process, multi-test correction fdr, p-value < 0.05) (joung et al., ) as well as classification superviewer (provart and tong, ) were used. for this analysis we used genes […]

PMCID: 5460419
PMID: 28592995
DOI: 10.1186/s13072-017-0132-6

[…] marked in this organ (fig. e, g; additional file : figures s9–s12; additional file : table iii). to determine the biological function of these genes, we performed a gene ontology analysis (go) using plant metgenmap []. organ-specific hyperacetylated and hypomethylated genes, displayed biological processes terms consistent with metabolic needs and physiological aspects of their corresponding […]


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Plant MetGenMAP institution(s)
Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, USA; Plant Molecular and Cellular Biology Program, Horticultural Sciences, University of Florida, Gainesville, FL, USA; United States Department of Agriculture-Agricultural Research Service Robert W. Holley Center for Agriculture and Health, Ithaca, NY, USA
Plant MetGenMAP funding source(s)
Supported by the National Science Foundation (grant nos. DBI–0501778, DBI–0605659, and DBI–082061).

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