Plant-mPLoc protocols

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Plant-mPLoc specifications

Information


Unique identifier OMICS_05411
Name Plant-mPLoc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hong-Bin Shen <>

Publication for Plant-mPLoc

Plant-mPLoc in pipelines

 (4)
2018
PMCID: 5852580
PMID: 29439434
DOI: 10.3390/genes9020084

[…] length, molecular weight, and isoelectric point) were determined from the primary gene sequence using expasy []. the sub-cellular localization of the identified cmagst proteins was determined using plant-mploc []. the gst-n domain sequences were aligned using clustal omega []. the multiple expectation maximization for motif elicitation (meme) [] was used to determine conserved motifs […]

2017
PMCID: 5562893
PMID: 28821770
DOI: 10.1038/s41598-017-08976-x

[…] out using eukaryotic organism grouping and default d-cut-off values which are optimised for correlation. subcellular localization was predicted using the full length protein sequence as a query on plant-mploc (http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/)., the presence of burp domains in zmrd22a and zmrd22b was detected using myhits sib motif scan […]

2016
PMCID: 5005469
PMID: 27610237
DOI: 10.1038/hortres.2016.42

[…] an e-value cutoff of 1−10 was adopted. all identified motifs were annotated by comparison with conserved motifs in pfam and smart databases. protein subcellular localization was predicted using the plant-mploc database (http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/#). full-length protein sequences of grapevine, arabidopsis, poplar, tomato and other already described dof-encoding genes […]

2015
PMCID: 4688393
PMID: 26779187
DOI: 10.3389/fpls.2015.01140

[…] al., ). finally, a sequence harboring fasciclin domain, agp-like glycosylated region, and n-terminal signal was considered as a populus fla gene. protein subcellular localization was examined using plant-mploc (http://www.csbio.sjtu.edu.cn/bioinf/plant-multi/). the expasy (http://web.expasy.org/compute_pi) was used to predict the pi and molecular weight., arabidopsis atfla protein and wheat […]


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Plant-mPLoc in publications

 (64)
PMCID: 5902686
PMID: 29692790
DOI: 10.3389/fpls.2018.00425

[…] was based on the annotation from uniprot (). the subcellular localization was predicted according to the integration of prediction results of the fuel-mloc server, wolf psort, cello version 2.5, plant-mploc and uniprotkb. principal component analysis (pca) was conducted in the r language and environment for statistical computing (version 3.0.2, auckland, new zealand) (). thirteen […]

PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] was determined by bootstrap analysis using 100 replicates []., the subcellular localization was analyzed in silico using bacello [], eslpred [], yloc [], psort ii [], loctree3 [], wolf psort [], plant-mploc [], and cello []. the ncbi database was used to retrieve a 1500-bp dna sequence from the 5′-upstream region of each alba gene, and the corresponding cis-acting regulatory elements […]

PMCID: 5877776
PMID: 29558397
DOI: 10.3390/ijms19030915

[…] localization of identified ap genes from rice and barley was carried out using publicly available subcellular localization prediction programs; targetp [], predotar [], chlorop 1.1 [] and plant-mploc []. proteins targeting to the peroxisomes were predicted using predplantpts1 []., microarray probe-set ids with high homology were retrieved for all arabidopsis, rice and barley ap genes, […]

PMCID: 5864901
PMID: 29616059
DOI: 10.3389/fpls.2018.00346

[…] domains were predicted by using ncbi conserved domain database. molecular weight and isoelectric point were predicted using online software expasy. subcellular localization was predicted by plant-mploc 2.0 () (supplementary figure )., a gene construct overexpressing muwrky3 was generated by cloning full-length gene to binary vector pcambia2301 under a constitutive 35s promoter. […]

PMCID: 5852580
PMID: 29439434
DOI: 10.3390/genes9020084

[…] length, molecular weight, and isoelectric point) were determined from the primary gene sequence using expasy []. the sub-cellular localization of the identified cmagst proteins was determined using plant-mploc []. the gst-n domain sequences were aligned using clustal omega []. the multiple expectation maximization for motif elicitation (meme) [] was used to determine conserved motifs […]


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Plant-mPLoc institution(s)
Institute of Image Processing and Pattern Recognition, Shanghai Jiaotong University, Shanghai, China

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