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Protocols

Plant-mPLoc specifications

Information


Unique identifier OMICS_05411
Name Plant-mPLoc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Hong-Bin Shen

Publication for Plant-mPLoc

Plant-mPLoc citations

 (62)
library_books

Comparative Proteome Analysis of Wheat Flag Leaves and Developing Grains Under Water Deficit

2018
Front Plant Sci
PMCID: 5902686
PMID: 29692790
DOI: 10.3389/fpls.2018.00425

[…] tion was based on the annotation from UniProt (). The subcellular localization was predicted according to the integration of prediction results of the FUEL-mLoc Server, WoLF PSORT, CELLO version 2.5, Plant-mPLoc and UniProtKB. Principal component analysis (PCA) was conducted in the R language and Environment for Statistical Computing (version 3.0.2, Auckland, New Zealand) (). Thirteen physiologica […]

library_books

Genome Wide Identification of the Alba Gene Family in Plants and Stress Responsive Expression of the Rice Alba Genes

2018
Genes
PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] The subcellular localization was analyzed in silico using BaCelLo [], ESLPred [], YLoc [], PSORT II [], LocTree3 [], WoLF PSORT [], Plant-mPLoc [], and CELLO []. The NCBI database was used to retrieve a 1500-bp DNA sequence from the 5′-upstream region of each Alba gene, and the corresponding cis-acting regulatory elements were inv […]

library_books

Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress

2018
Int J Mol Sci
PMCID: 5877776
PMID: 29558397
DOI: 10.3390/ijms19030915

[…] subcellular localization of identified AP genes from rice and barley was carried out using publicly available subcellular localization prediction programs; TargetP [], Predotar [], ChloroP 1.1 [] and Plant-mPLOC []. Proteins targeting to the peroxisomes were predicted using PredPlantPTS1 []. […]

call_split

A Novel WRKY Transcription Factor, MuWRKY3 (Macrotyloma uniflorum Lam. Verdc.) Enhances Drought Stress Tolerance in Transgenic Groundnut (Arachis hypogaea L.) Plants

2018
Front Plant Sci
PMCID: 5864901
PMID: 29616059
DOI: 10.3389/fpls.2018.00346
call_split See protocol

[…] Conserved domains were predicted by using NCBI conserved domain database. Molecular weight and isoelectric point were predicted using online software Expasy. Subcellular localization was predicted by Plant-mPLoc 2.0 () (Supplementary Figure ). […]

library_books

Genome Wide Identification, Characterization, and Expression Profiling of Glutathione S Transferase (GST) Family in Pumpkin Reveals Likely Role in Cold Stress Tolerance

2018
Genes
PMCID: 5852580
PMID: 29439434
DOI: 10.3390/genes9020084

[…] n length, molecular weight, and isoelectric point) were determined from the primary gene sequence using Expasy []. The sub-cellular localization of the identified CmaGST proteins was determined using Plant-mPLoc []. The GST-N domain sequences were aligned using CLUSTAL Omega []. The Multiple Expectation Maximization for Motif Elicitation (MEME) [] was used to determine conserved motifs in the enco […]

library_books

The mycorrhiza dependent defensin MtDefMd1 of Medicago truncatula acts during the late restructuring stages of arbuscule containing cells

2018
PLoS One
PMCID: 5784984
PMID: 29370287
DOI: 10.1371/journal.pone.0191841

[…] as (Benedito et al., 2008), MtDefMd2 (Medtr.8g012835.1, Mtr.7210.1.S1_at), MtDefMd3 (Medtr.8g012875, Mtr.3215.1.S1_at), and MtDefMd4 (Medtr.8g012885, Mtr.31214.1.S1_at) were analyzed with SignalP [], Plant-mPloc [], and SherLoc2 []. […]


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Plant-mPLoc institution(s)
Institute of Image Processing and Pattern Recognition, Shanghai Jiaotong University, Shanghai, China

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