Plant Reactome statistics

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Plant Reactome specifications


Unique identifier OMICS_13485
Name Plant Reactome
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse, Application programming interface
User data submission Not allowed
Maintained Yes



  • person_outline Pankaj Jaiswal

Publication for Plant Reactome

Plant Reactome citations


The Sequenced Angiosperm Genomes and Genome Databases

Front Plant Sci
PMCID: 5909171
PMID: 29706973
DOI: 10.3389/fpls.2018.00418

[…] uerying, download, and online comparison of grass genomic data sources through a single portal (Tello-Ruiz et al., ). Besides the genome framework, Gramene hosts a pathway framework that integrates a plant reactome pathway, and the pathway tool platform “Cyc Pathways,” allowing the fast comparison of grass-specific pathways.LIS ( is the genome information portal for 13 economically […]


Expression Atlas: gene and protein expression across multiple studies and organisms

Nucleic Acids Res
PMCID: 5753389
PMID: 29165655
DOI: 10.1093/nar/gkx1158

[…] Baseline expression data from Expression Atlas continue to be automatically included in Ensembl, Ensembl Genomes, Gramene (), Ensembl Plants (), Reactome () and Plant Reactome (), via Javascript-based widgets. Since the last update, the baseline expression widget is also available through WormBase (), the Complex Portal () and the Target Validation Platform b […]


Ensembl Genomes 2018: an integrated omics infrastructure for non vertebrate species

Nucleic Acids Res
PMCID: 5753204
PMID: 29092050
DOI: 10.1093/nar/gkx1011

[…] ot linked to the genome. The number of cross-referenced genes has increased from 1491 to 2756, which comprises 98.9% of the potentially mappable genes. Plant genes have been linked to pathways in the Plant Reactome ( () database.Finally, Ensembl Genomes is now available for download in RDF format. […]


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Plant Reactome institution(s)
Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA; Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, New York, NY, USA; Ontario Institute of Cancer Research, Toronto, ON, Canada; Oregon Health & Science University, Portland, OR, USA; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge, UK; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; USA Department of Agriculture – Agriculture Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, USA
Plant Reactome funding source(s)
The Gramene database Award [NSF IOS-1127112] supported the project with in-kind infrastructure and intellectual support from the human Reactome database project [NIH: P41 HG003751, ENFIN LSHG-CT-2005-518254, Ontario Research Fund, and EBI Industry Programme);The Planteome Project [NSF IOS:1340112] provided In-Paranoid gene homology dataset.

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