Plant Reactome statistics

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Plant Reactome specifications

Information


Unique identifier OMICS_13485
Name Plant Reactome
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse, Application programming interface
User data submission Not allowed
Maintained Yes

Documentation


Maintainer


  • person_outline Pankaj Jaiswal

Publication for Plant Reactome

Plant Reactome citations

 (3)
library_books

The Sequenced Angiosperm Genomes and Genome Databases

2018
Front Plant Sci
PMCID: 5909171
PMID: 29706973
DOI: 10.3389/fpls.2018.00418

[…] uerying, download, and online comparison of grass genomic data sources through a single portal (Tello-Ruiz et al., ). Besides the genome framework, Gramene hosts a pathway framework that integrates a plant reactome pathway, and the pathway tool platform “Cyc Pathways,” allowing the fast comparison of grass-specific pathways.LIS (legumeinfo.org) is the genome information portal for 13 economically […]

library_books

Expression Atlas: gene and protein expression across multiple studies and organisms

2017
Nucleic Acids Res
PMCID: 5753389
PMID: 29165655
DOI: 10.1093/nar/gkx1158

[…] Baseline expression data from Expression Atlas continue to be automatically included in Ensembl, Ensembl Genomes, Gramene (), Ensembl Plants (), Reactome () and Plant Reactome (), via Javascript-based widgets. Since the last update, the baseline expression widget is also available through WormBase (), the Complex Portal () and the Target Validation Platform b […]

library_books

Ensembl Genomes 2018: an integrated omics infrastructure for non vertebrate species

2017
Nucleic Acids Res
PMCID: 5753204
PMID: 29092050
DOI: 10.1093/nar/gkx1011

[…] ot linked to the genome. The number of cross-referenced genes has increased from 1491 to 2756, which comprises 98.9% of the potentially mappable genes. Plant genes have been linked to pathways in the Plant Reactome (http://plantreactome.gramene.org) () database.Finally, Ensembl Genomes is now available for download in RDF format. […]

Citations

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Plant Reactome institution(s)
Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA; Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, New York, NY, USA; Ontario Institute of Cancer Research, Toronto, ON, Canada; Oregon Health & Science University, Portland, OR, USA; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge, UK; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; USA Department of Agriculture – Agriculture Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, NY, USA
Plant Reactome funding source(s)
The Gramene database Award [NSF IOS-1127112] supported the project with in-kind infrastructure and intellectual support from the human Reactome database project [NIH: P41 HG003751, ENFIN LSHG-CT-2005-518254, Ontario Research Fund, and EBI Industry Programme);The Planteome Project [NSF IOS:1340112] provided In-Paranoid gene homology dataset.

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