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Plant-Specific Myristoylation Predictor specifications

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Unique identifier OMICS_10063
Name Plant-Specific Myristoylation Predictor
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for Plant-Specific Myristoylation Predictor

Plant-Specific Myristoylation Predictor in publications

 (4)
PMCID: 4828459
PMID: 27148305
DOI: 10.3389/fpls.2016.00477

[…] were used to predict tmds, myristoylation and s-acylation sites. the number of tmds was determined using the hmmtop program. n-terminal myristoylation and s-acylation sites were predicted using the plant-specific myristoylation predictor and css-palm 4.0 (with high threshold) algorithms, respectively. the itak program was used to classify of all protein kinases experimentally identified […]

PMCID: 4702179
PMID: 26733237
DOI: 10.1038/srep18973

[…] the schematic gmcdpk gene structure diagrams were drawn on the gene structure display server (http://gsds.cbi.pku.edu.cn/). myristoylation and palmitoylation sites were predicted using the plant-specific myristoylation predictor (http://plantsp.genomics.purdue.edu/myrist.html) and the css-palm 3.0 software, respectively. the subcellular localization in chloroplasts and mitochondria […]

PMCID: 3668125
PMID: 23609608
DOI: 10.1007/s11103-013-0061-0

[…] substrate specificity of one of the two arabidopsis n-myristoyltransferases in more detail and concluded that plant nmts have relaxed substrate specificity compared to other enzymes. subsequently, a plant-specific myristoylation predictor (http://plantsp.genomics.purdue.edu/myrist.html) was developed by podell and gribskov () using only plant myristoylation data. because this program was trained […]

PMCID: 1609167
PMID: 17022830
DOI: 10.1186/1471-2229-6-22

[…] (5'-atggccgactccctaacct-3') and prmmh75 (5'-acaaaaagggcttcctgtgc-3')., sequencing and bioinformatics were performed as described previously []. the myristoylation pattern was identified with the plant specific myristoylation predictor software []., total rna from maize tissue was isolated and blotted as described previously []. as a control for equal rna loading, blots were stained […]

Plant-Specific Myristoylation Predictor institution(s)
San Diego Supercomputer Center, University of California San Diego, La Jolla CA, USA; Department of Biology, University of California San Diego, La Jolla CA, USA
Plant-Specific Myristoylation Predictor funding source(s)
This work was supported by NSF awards DBI-0217312 and DBI-0077378.

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