Plant-Specific Myristoylation Predictor statistics

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Number of citations per year for the bioinformatics software tool Plant-Specific Myristoylation Predictor
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This map represents all the scientific publications referring to Plant-Specific Myristoylation Predictor per scientific context
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Plant-Specific Myristoylation Predictor specifications

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Unique identifier OMICS_10063
Name Plant-Specific Myristoylation Predictor
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for Plant-Specific Myristoylation Predictor

Plant-Specific Myristoylation Predictor citations

 (5)
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Proteomic Analysis of a Poplar Cell Suspension Culture Suggests a Major Role of Protein S Acylation in Diverse Cellular Processes

2016
Front Plant Sci
PMCID: 4828459
PMID: 27148305
DOI: 10.3389/fpls.2016.00477

[…] d were used to predict TMDs, myristoylation and S-acylation sites. The number of TMDs was determined using the HMMTOP program. N-terminal myristoylation and S-acylation sites were predicted using the Plant-Specific Myristoylation Predictor and CSS-Palm 4.0 (with high threshold) algorithms, respectively. The iTAK program was used to classify of all protein kinases experimentally identified as S-acy […]

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Genome wide identification of calcium dependent protein kinases in soybean and analyses of their transcriptional responses to insect herbivory and drought stress

2016
Sci Rep
PMCID: 4702179
PMID: 26733237
DOI: 10.1038/srep18973

[…] pute_pi/). The schematic GmCDPK gene structure diagrams were drawn on the Gene Structure Display Server (http://gsds.cbi.pku.edu.cn/). Myristoylation and palmitoylation sites were predicted using the Plant-Specific Myristoylation Predictor (http://plantsp.genomics.purdue.edu/myrist.html) and the CSS-Palm 3.0 software, respectively. The subcellular localization in chloroplasts and mitochondria was […]

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Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research

2013
Front Plant Sci
PMCID: 3752443
PMID: 23986771
DOI: 10.3389/fpls.2013.00330

[…] p://inparanoid51.sbc.su.se/cgi-bin/index.cgi). Information about transmembrane domains in the protein sequences was obtained from the TMHMM server version 2.0 (http://www.cbs.dtu.dk/services/TMHMM/). Plant-specific myristoylation predictor (http://plantsp.sdsc.edu/myrist.html) was used to identify the potential N-terminal myristoylation sites. The presence of N-terminal signal peptides was predict […]

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The myristoylated amino terminus of an Arabidopsis calcium dependent protein kinase mediates plasma membrane localization

2013
Plant Mol Biol
PMCID: 3668125
PMID: 23609608
DOI: 10.1007/s11103-013-0061-0

[…] substrate specificity of one of the two Arabidopsis N-myristoyltransferases in more detail and concluded that plant NMTs have relaxed substrate specificity compared to other enzymes. Subsequently, a Plant-Specific Myristoylation Predictor (http://plantsp.genomics.purdue.edu/myrist.html) was developed by Podell and Gribskov () using only plant myristoylation data. Because this program was trained […]

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The PTI1 like kinase ZmPti1a from maize (Zea mays L.) co localizes with callose at the plasma membrane of pollen and facilitates a competitive advantage to the male gametophyte

2006
BMC Plant Biol
PMCID: 1609167
PMID: 17022830
DOI: 10.1186/1471-2229-6-22

[…] Sequencing and bioinformatics were performed as described previously []. The myristoylation pattern was identified with the Plant Specific Myristoylation Predictor software []. […]


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Plant-Specific Myristoylation Predictor institution(s)
San Diego Supercomputer Center, University of California San Diego, La Jolla CA, USA; Department of Biology, University of California San Diego, La Jolla CA, USA
Plant-Specific Myristoylation Predictor funding source(s)
This work was supported by NSF awards DBI-0217312 and DBI-0077378.

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