Plantagora statistics

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Associated diseases

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Plantagora specifications


Unique identifier OMICS_02116
Name Plantagora
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


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Publication for Plantagora

Plantagora in publications

PMCID: 5066668
PMID: 26801048
DOI: 10.1111/pbi.12511

[…] with quast software (gurevich et al., ). quast detects larger structural differences (misassemblies) and smaller insertions and deletions <50 bp (indels). according to the criteria defined by the plantagora project (barthelson et al., ), misassemblies were categorized into ‘global misassemblies’ and ‘local misassemblies’ (see for full details). on average, 98.5% of reference sequence […]

PMCID: 4009782
PMID: 24832233
DOI: 10.3390/biology1020439

[…] the known and predicted relationships among genes, proteins, and molecules in order to enable scientists to visualize, integrate, and analyze genomic data from a systems biology perspective or the plantagora platform [], which addresses the gap between having the technical tools for plant genome sequencing and knowing precisely the best way to use them. , ngs can be said to have accelerated […]

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Plantagora institution(s)
iPlant Collaborative, The BIO5 Institute, University of Arizona, Tucson, AZ, USA

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