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- person_outline Stephane Rombauts
Publications for PlantCARE
Genome wide analysis of the SPL/miR156 module and its interaction with the AP2/miR172 unit in barley
[…] semble database (http://plants.ensembl.org/Hordeum_vulgare/Info/Index). Promoter regions, defined as the 1000-bp sequences upstream of start codons were searched for cis-regulatory elements using the PlantCARE database. […]
Identification and characterization of a plastidial ω 3 fatty acid desaturase EgFAD8 from oil palm (Elaeis guineensis Jacq.) and its promoter response to light and low temperature
[…] gram with default setting . A phylogenetic tree was constructed using the neighbor-joining method in MEGA5 . Promoter prediction and cis-acting regulatory element analysis were carried out on the PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html/) . […]
The Soybean GmNARK Affects ABA and Salt Responses in Transgenic Arabidopsis thaliana
[…] ethod with the bootstrip values of 1000 by MEGA5 (). The gene structure analysis was done by the online software. Promoter analysis of GmNARK was performed using online analysis software of PLACE and PlantCARE. The region located 2 kb upstream of GmNARK coding sequences was used as promoter sequence for analyzing cis-elements. GmNARK protein domain analysis was done by the online software of SMART […]
Elucidation and functional characterization of CsPSY and CsUGT promoters in Crocus sativus L.
[…] lustalW program. The presence of putative cis-regulatory elements were detected by PLACE (http://www.dna.affrc.go.jp/PLACE/signalscan.html) and Plant CARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html) scan tools ). […]
Genome wide identification of wheat (Triticum aestivum) expansins and expansin expression analysis in cold tolerant and cold sensitive wheat cultivars
[…] spect software (http://mapinspect.software.informer.com/) was used to analyze the genic physical location on chromosomes. Cis-acting elements analysis in the 2 -kb upstream regions was performed with PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html/) [, ].The overall expression and sub-expression of the wheat expansins were analyzed using previously developed databases. The ov […]
Genome Wide Identification of the Alba Gene Family in Plants and Stress Responsive Expression of the Rice Alba Genes
[…] CELLO . The NCBI database was used to retrieve a 1500-bp DNA sequence from the 5′-upstream region of each Alba gene, and the corresponding cis-acting regulatory elements were investigated with the plantCARE database . […]
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