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Protocols

PlantCARE specifications

Information


Unique identifier OMICS_09583
Name PlantCARE
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Stephane Rombauts

Publications for PlantCARE

PlantCARE citations

 (123)
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Genome wide analysis of the SPL/miR156 module and its interaction with the AP2/miR172 unit in barley

2018
Sci Rep
PMCID: 5935748
PMID: 29728569
DOI: 10.1038/s41598-018-25349-0
call_split See protocol

[…] semble database (http://plants.ensembl.org/Hordeum_vulgare/Info/Index). Promoter regions, defined as the 1000-bp sequences upstream of start codons were searched for cis-regulatory elements using the PlantCARE database. […]

library_books

Identification and characterization of a plastidial ω 3 fatty acid desaturase EgFAD8 from oil palm (Elaeis guineensis Jacq.) and its promoter response to light and low temperature

2018
PLoS One
PMCID: 5919639
PMID: 29698515
DOI: 10.1371/journal.pone.0196693

[…] gram with default setting []. A phylogenetic tree was constructed using the neighbor-joining method in MEGA5 []. Promoter prediction and cis-acting regulatory element analysis were carried out on the PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html/) []. […]

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The Soybean GmNARK Affects ABA and Salt Responses in Transgenic Arabidopsis thaliana

2018
Front Plant Sci
PMCID: 5915533
PMID: 29720993
DOI: 10.3389/fpls.2018.00514
call_split See protocol

[…] ethod with the bootstrip values of 1000 by MEGA5 (). The gene structure analysis was done by the online software. Promoter analysis of GmNARK was performed using online analysis software of PLACE and PlantCARE. The region located 2 kb upstream of GmNARK coding sequences was used as promoter sequence for analyzing cis-elements. GmNARK protein domain analysis was done by the online software of SMART […]

call_split

Elucidation and functional characterization of CsPSY and CsUGT promoters in Crocus sativus L.

2018
PLoS One
PMCID: 5892871
PMID: 29634744
DOI: 10.1371/journal.pone.0195348
call_split See protocol

[…] lustalW program. The presence of putative cis-regulatory elements were detected by PLACE (http://www.dna.affrc.go.jp/PLACE/signalscan.html) and Plant CARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html) scan tools []). […]

library_books

Genome wide identification of wheat (Triticum aestivum) expansins and expansin expression analysis in cold tolerant and cold sensitive wheat cultivars

2018
PLoS One
PMCID: 5875846
PMID: 29596529
DOI: 10.1371/journal.pone.0195138

[…] spect software (http://mapinspect.software.informer.com/) was used to analyze the genic physical location on chromosomes. Cis-acting elements analysis in the 2 -kb upstream regions was performed with PlantCARE (http://bioinformatics.psb.ugent.be/webtools/plantcare/html/) [, ].The overall expression and sub-expression of the wheat expansins were analyzed using previously developed databases. The ov […]

library_books

Genome Wide Identification of the Alba Gene Family in Plants and Stress Responsive Expression of the Rice Alba Genes

2018
Genes
PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] CELLO []. The NCBI database was used to retrieve a 1500-bp DNA sequence from the 5′-upstream region of each Alba gene, and the corresponding cis-acting regulatory elements were investigated with the plantCARE database []. […]

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PlantCARE institution(s)
Vakgroep Moleculaire Genetica, Departement Plantengenetica, Vlaams Interuniversitair Instituut voor Biotechnologie, Universiteit Gent, Gent, Belgium

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