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PlantCAZyme specifications

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Unique identifier OMICS_05967
Name PlantCAZyme
Restrictions to use None
Maintained Yes

Publication for PlantCAZyme

PlantCAZyme citations

 (2)
library_books

Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement

2018
Front Plant Sci
PMCID: 5821101
PMID: 29503654
DOI: 10.3389/fpls.2018.00151

[…] at it provides an automated and comprehensive annotation of CAZymes in addition to an easy access to sequences, signature domains, alignments, and phylogeny data of CAZyme-related enzyme families (). PlantCAZyme is a web resource built upon dbCAN and is especially dedicated to providing pre-computed sequence and annotation data on CAZymes. It has information on 43,7900 CAZymes of 159 protein famil […]

library_books

Glycosyltransferase Family 43 Is Also Found in Early Eukaryotes and Has Three Subfamilies in Charophycean Green Algae

2015
PLoS One
PMCID: 4449007
PMID: 26023931
DOI: 10.1371/journal.pone.0128409

[…] vetoptimiser.shtml) was used to optimize the assembly parameters as suggested by []. Only assembled transcripts that led to peptide sequences longer than 100 amino acids and matching GT43 proteins of PlantCAZyme database (E-value < 1e-10) and containing GT43 domains (E-value < 1e-10) were kept for further analyses. […]


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PlantCAZyme institution(s)
Department of Computer Science and Department of Biological Sciences, Northern Illinois University, DeKalb, IL, USA

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