PlantcircBase specifications


Unique identifier OMICS_19904
Name PlantcircBase
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • Plants and Fungi
    • Arabidopsis thaliana
    • Hordeum vulgare
    • Oryza sativa
    • Zea mays


  • person_outline Longjiang Fan

Publication for PlantcircBase

PlantcircBase citations


Genome Wide Identification of Circular RNAs in Arabidopsis thaliana

Front Plant Sci
PMCID: 5623955
PMID: 29021802
DOI: 10.3389/fpls.2017.01678
call_split See protocol

[…] ed A. thaliana circRNAs are in GSE77672. To evaluate the conservation of circRNAs, the circRNA sequences of A. thaliana, O. sativa, H. vulgare, S. lycopersicum, and Z. mays were first downloaded from PlantcircBase. Then, our identified circRNA sequences (Supplementary Table ) from A. thaliana were used for a BLAST search (BlastN in BLAST+, v2.2.27, E < 1e-5) against the circRNA sequences from A. t […]


Identifying and Characterizing the Circular RNAs during the Lifespan of Arabidopsis Leaves

Front Plant Sci
PMCID: 5517402
PMID: 28785273
DOI: 10.3389/fpls.2017.01278

[…] obtained from GSE43616 for identifying of circRNAs. We identified a total of 168 circRNAs (Supplementary Table ). We further compared our identified circRNAs with the ones of Arabidopsis thaliana in PlantcircBase () database, and found 40 novel circRNAs.Among those identified circRNAs, 158 (94.1%) of them were generated from the exons of corresponding genes. Interestingly, splice sites of 134 (84 […]

PlantcircBase institution(s)
Institute of Crop Science and Institute of Bioinformatics, Zhejiang University, Hangzhou, China; CSIRO Agriculture and Food, Canberra, ACT, Australia
PlantcircBase funding source(s)
Supported by the National Science Foundation of China (91435111), the National Basic Research Program of China (2015CB150200), Shanghai Municipal Commission of Agriculture (2014-7-1-4), and Jiangsu Collaborative Innovation Center for Modern Crop Production (JCIC-MCP).

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