plantiSMASH statistics

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Associated diseases

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plantiSMASH specifications


Unique identifier OMICS_14355
Name plantiSMASH
Alternative name plant antibiotics & Secondary Metabolite Analysis Shell
Interface Web user interface
Restrictions to use None
Input data Plant genome sequences.
Input format FASTA+GFF3
Output data Gene cluster outline and comparative genomics, gene expression heatmap, intercluster coexpression hiveplot, coexpression ego network.
Output format HTML
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Marnix Medema <>

Publication for plant antibiotics & Secondary Metabolite Analysis Shell

plantiSMASH in publication

PMCID: 5814883
PMID: 29194888
DOI: 10.1002/anie.201711444

[…] clustered with a pt gene in plant genomes., this clustering phenomenon has enabled us to rapidly search available sequenced plant genomes for candidate sts genes using a customized algorithm (plantismash) designed to identify clustered biosynthetic genes in plant genomes., intriguingly, although fungal and plant stss share about 10 % protein sequence identity and are phylogenetically […]

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plantiSMASH institution(s)
Bioinformatics Group, Wageningen University, Wageningen, Netherlands; Teknik Informatika, Universitas Lampung, Lampung, Indonesia; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark; Department of Metabolic Biology, John Innes Centre, Norwich Research Park, Norwich, UK
plantiSMASH funding source(s)
This work was supported by the Graduate School for Experimental Plant Sciences (EPS), by a grant from the Novo Nordisk Foundation; by the UK Biotechnological and Biological Sciences Research Council (BBSRC) Institute Strategic Programme Grant ‘Understanding and Exploiting Plant and Microbial Metabolism’ (BB/J004561/1), the John Innes Foundation, the joint Engineering and Physical Sciences Research Council/ BBSRC-funded OpenPlant Synthetic Biology Research Centre grant BB/L014130/1 and a National Institutes of Health Genome to Natural Products Network award U101GM110699. It is supported by VENI grant 863.15.002 from The Netherlands Organization for Scientific Research (NWO), and by the Genome to Natural Products Network.

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