PlantMirnaT specifications

Information


Unique identifier OMICS_22949
Name PlantMirnaT
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Sun Kim

Publication for PlantMirnaT

PlantMirnaT citation

library_books

MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants

2016
Front Plant Sci
PMCID: 4906921
PMID: 27379117
DOI: 10.3389/fpls.2016.00817

[…] not need third party tools, rather, it uses a graphic user interface for input and output of the data, and the display of recognized miRNA with RNAseq reads is done with the help of a hairpin diagram.PlantMirnaT developed by Rhee et al. () is a miRNA and mRNA integrated analysis system via utilizing the sequencing data effectively. Its major features include a short read mapping tool, and an algor […]

PlantMirnaT institution(s)
Department of Computer Science and Engineering, Seoul National University, Seoul, Korea; Bioinformatics Institute, Seoul National University, Seoul, Korea; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Korea; School of Informatics and Computing, Computer Science Department, Indiana University, Bloomington, IN, USA
PlantMirnaT funding source(s)
Supported by a grant from KOBIC, the Bio & Medical Technology Development Program of the National Research Foundation (NRF) funded by the Ministry of Science, ICT & Future Planning (2012M3A9D1054622), Next-Generation Information Computing Development Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT & Future Planning (No. NRF-2012M3C4A7033341) and a grant from the Next-Generation BioGreen 21 Program (No. PJ009037022012), Rural Development Administration, Republic of Korea.

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