PlantNATsDB specifications

Information


Unique identifier OMICS_04421
Name PlantNATsDB
Alternative name Plant Natural Antisense Transcripts DataBase
Restrictions to use None
Maintained Yes

Publication for Plant Natural Antisense Transcripts DataBase

PlantNATsDB citations

 (2)
library_books

Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs

2017
PMCID: 5545994
PMID: 28786034
DOI: 10.1186/s12284-017-0177-y

[…] endent pathways (such as the pri-miRNAs and the sirtrons). Thus, distinct bioinformatics toolkits should be selected to identify the sRNA precursors belonging to the two different types, respectively.PlantNATsDB (plant natural antisense transcripts database) (Chen et al., ) provides the users with the genome-wide prediction results of both cis- and trans-NAT pairs of 70 plant species. Gene locus I […]

library_books

Natural Antisense Transcripts in Plants: A Review and Identification in Soybean Infected with Phakopsora pachyrhizi SuperSAGE Library

2013
Sci World J
PMCID: 3710604
PMID: 23878522
DOI: 10.1155/2013/219798

[…] r bases (CATG) preserved were accepted. The in silico mapping of unitags over the NAT pair sequences (cis and trans) predicted by PlantsNATsDB [] were considered here.The PlantsNATsDB v.1.3 database (Plant Natural Antisense Transcripts Database; http://bis.zju.edu.cn/pnatdb/; []) presents information covering five cis-NAT classes, based on their relative orientation and overlap degree [Divergent ( […]

PlantNATsDB institution(s)
Department of Bioinformatics, State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China

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