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PlantProm specifications

Information


Unique identifier OMICS_01875
Name PlantProm
Alternative name Plant Promoter database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Victor Solovyev

Publication for Plant Promoter database

PlantProm citations

 (3)
library_books

Production of Phytotoxic Cationic α Helical Antimicrobial Peptides in Plant Cells Using Inducible Promoters

2014
PLoS One
PMCID: 4227650
PMID: 25387106
DOI: 10.1371/journal.pone.0109990

[…] m) allowed identification of the gene associated to every probe, and the sequence was retrieved from GenBank (http://www.ncbi.nlm.nih.gov/genbank). Likely promoter sequences were identified using the PlantProm DB, an annotated and non-redundant database of proximal promoter sequences , . […]

library_books

Transcription of Nuclear Organellar DNA in a Model Plant System

2014
Genome Biol Evol
PMCID: 4079196
PMID: 24868015
DOI: 10.1093/gbe/evu111

[…] highly transcribed norg insertion colocalized with nuclear gene. Open chromatin status of individual norgs was checked as previously described (). Annotated rice promoter regions were retrieved from PlantProm (). The overlap between promoter regions and 1-kb flanking regions of selected norgs was checked using R package “GenomicFeatures.” […]

library_books

EPD in its twentieth year: towards complete promoter coverage of selected model organisms

2005
Nucleic Acids Res
PMCID: 1347508
PMID: 16381980
DOI: 10.1093/nar/gkj146

[…] DNA 5′ end as the TSS and further applies a specialized algorithm to infer multiple promoters for a given gene. Arguments and results in favor of our approach were presented in a previous article (). PlantProm () is a smaller volume database of plant promoters based on published TSS mapping data. HemoPDB () is a more specialized resource for promoters of genes of the hematopoietic system, providin […]

Citations

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PlantProm institution(s)
Department of Computer Science, Royal Holloway, University of London, Egham, UK; School of Biological Sciences, Royal Holloway, University of London, London, UK; Softberry Inc., Mount Kisco, NY, USA
PlantProm funding source(s)
Supported by by grant 111/BIO14428 ‘Pattern Recognition Techniques for Gene Identification in Plant Genomic Sequences’, from the UK Biotechnology and Biological Sciences Research Council (BBSRC) and is designed and maintained at Royal Holloway, University of London in collaboration with Softberry Inc. (USA).

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