PlantQTL-GE specifications

Information


Unique identifier OMICS_21436
Name PlantQTL-GE
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa

Maintainer


This tool is not available anymore.

Publication for PlantQTL-GE

PlantQTL-GE citations

 (2)
library_books

Genome wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

2012
BMC Genomics
PMCID: 3542171
PMID: 23050870
DOI: 10.1186/1471-2164-13-544

[…] o be highly expressed as evident from the availability of ESTs for these genes (Additional file : Table S6). Further, we assessed the expression levels of MYB genes under various abiotic stresses by PlantQTL-GE [], GENEVESTIGATOR [,] and our previous microarray data experiment (E-MEXP-2401) with rice cv. Nagina 22 and IR64 under normal and drought conditions (Additional file : Table S7). In ou […]

library_books

Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations

2008
Int J Plant Genomics
PMCID: 2408710
PMID: 18528527
DOI: 10.1155/2008/524847

[…] utant lines, and cis elements from various databases []. Rice PIPELINE can be searched by clone sequence, clone name, GenBank accession number, or keyword. Another web-based database system, called “PlantQTL-GE,” was developed to facilitate quantitative traits locus (QTL)-based candidate gene identification and gene function analysis []. This database integrated marker data and gene expression da […]

PlantQTL-GE institution(s)
School of Life Sciences, Fudan University, Shanghai, China; Shanghai Agro-Biological Gene Center, Shanghai, China; Department of Computer Science and Engineering, Washington University in St Louis, St Louis, MO, USA; Shanghai Center for Bioinformation Technology, Shanghai, China
PlantQTL-GE funding source(s)
Supported by grants from The Rockefeller Foundation, Shanghai Science and Technology Committee (05DJ14008 and 03DJ14015), National Science Foundation of China (30570109) and in part by United States of America, National Science Foundation Grants ITR/EIA-0113618 and IIS-0535257.

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