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Protocols

PlantsP specifications

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Unique identifier OMICS_04422
Name PlantsP
Restrictions to use None
Maintained Yes

Publication for PlantsP

PlantsP citations

 (19)
library_books

Comparative Analysis of CDPK Family in Maize, Arabidopsis, Rice, and Sorghum Revealed Potential Targets for Drought Tolerance Improvement

2017
PMCID: 5742180
PMID: 29312925
DOI: 10.3389/fchem.2017.00115

[…] -suite.org/; Bailey et al., ). The MEME suite was used to search 5 best motifs with minimum width of 12, maximum width of 60 and E < 0.01. Myristoylation and Palmitoylation sites were predicted using PlantsP (http://plantsp.genomics.purdue.edu/myrist.html) and CSS-Palm 3.0 (Ren et al., ) respectively while N-terminal acylation prediction was done using NetAcet 1.0 (Kiemer et al., ). EF-hand domain […]

library_books

Post genomics era for orchid research

2017
PMCID: 5727007
PMID: 29234904
DOI: 10.1186/s40529-017-0213-7

[…] na and rice (Oryza sativa), the two model plant species, ~ 1000 and ~ 1500 Ser/Thr protein kinases have been identified, corresponding to 2.9 and 2.3% of the proteomes in respective organisms (http://plantsp.genomics.purdue.edu/index.html) (Shiu et al. ; Dardick et al. ).According to the taxonomy of Hanks and Hunter and the studies based on kinase domain similarity and phylogeny of eukaryotes, the […]

library_books

Genome wide survey indicates diverse physiological roles of the turnip (Brassica rapa var. rapa) calcium dependent protein kinase genes

2017
Sci Rep
PMCID: 5693941
PMID: 29150669
DOI: 10.1038/s41598-017-16102-0

[…] rand average of hydropathicity were predicted by the ProtParam tool of ExPaSy (http://web.expasy.org/protparam/). Myristoylation and palmitoylation sites and N-terminal acylation were predicted using PlantsP (http://plantsp.genomics.purdue.edu/myrist.html), CSS-Palm 3.0, and NetAcet 1.0 software, respectively. […]

library_books

Genome wide survey indicates diverse physiological roles of the barley (Hordeum vulgare L.) calcium dependent protein kinase genes

2017
Sci Rep
PMCID: 5509701
PMID: 28706292
DOI: 10.1038/s41598-017-05646-w

[…] eight (MW), theoretical pI and grand average of hydropathicity (GRAVY) were calculated using the ProtParam tool of ExPaSy (http://web.expasy.org/protparam/). Myristoylaton motifs were predicted using PlantsP (http://plantsp.genomics.purdue.edu/myrist.html). Palmitoylation and N-terminal acylation predictions were performed using CSS-Palm 3.0 and NetAcet 1.0 software, respectively. The MEME program […]

library_books

Analysis of EF Hand Proteins in Soybean Genome Suggests Their Potential Roles in Environmental and Nutritional Stress Signaling

2017
Front Plant Sci
PMCID: 5443154
PMID: 28596783
DOI: 10.3389/fpls.2017.00877

[…] Conserved domains other than EF-hand motif were predicted using InterPro. Myristoylation sites were predicted using PlantsP. Promoter sequences of 1.5 kb upstream to the transcription start site of the genes encoding EF-hand proteins were retrieved from JBrowse, and the location of stress-related cis-acting regulat […]

library_books

Co expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum

2016
Sci Rep
PMCID: 5138846
PMID: 27922095
DOI: 10.1038/srep38436

[…] scription factor family and kinase family classifications were predicted by the standalone program iTAK (http://bioinfo.bti.cornell.edu/cgi-bin/itak/index.cgi) based on the rules from the PlnTFDB and PlantsP databases. A total of 3305 transcription factors and 1598 kinases were identified. GO was based on customized enrichment analysis in agriGO. […]


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PlantsP institution(s)
San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, USA

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