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PlantsP specifications


Unique identifier OMICS_04422
Name PlantsP
Restrictions to use None
Maintained Yes

Publication for PlantsP

PlantsP citations


Comparative Analysis of CDPK Family in Maize, Arabidopsis, Rice, and Sorghum Revealed Potential Targets for Drought Tolerance Improvement

PMCID: 5742180
PMID: 29312925
DOI: 10.3389/fchem.2017.00115

[…]; Bailey et al., ). The MEME suite was used to search 5 best motifs with minimum width of 12, maximum width of 60 and E < 0.01. Myristoylation and Palmitoylation sites were predicted using PlantsP ( and CSS-Palm 3.0 (Ren et al., ) respectively while N-terminal acylation prediction was done using NetAcet 1.0 (Kiemer et al., ). EF-hand domain […]


Post genomics era for orchid research

PMCID: 5727007
PMID: 29234904
DOI: 10.1186/s40529-017-0213-7

[…] na and rice (Oryza sativa), the two model plant species, ~ 1000 and ~ 1500 Ser/Thr protein kinases have been identified, corresponding to 2.9 and 2.3% of the proteomes in respective organisms ( (Shiu et al. ; Dardick et al. ).According to the taxonomy of Hanks and Hunter and the studies based on kinase domain similarity and phylogeny of eukaryotes, the […]


Genome wide survey indicates diverse physiological roles of the turnip (Brassica rapa var. rapa) calcium dependent protein kinase genes

Sci Rep
PMCID: 5693941
PMID: 29150669
DOI: 10.1038/s41598-017-16102-0

[…] rand average of hydropathicity were predicted by the ProtParam tool of ExPaSy ( Myristoylation and palmitoylation sites and N-terminal acylation were predicted using PlantsP (, CSS-Palm 3.0, and NetAcet 1.0 software, respectively. […]


Genome wide survey indicates diverse physiological roles of the barley (Hordeum vulgare L.) calcium dependent protein kinase genes

Sci Rep
PMCID: 5509701
PMID: 28706292
DOI: 10.1038/s41598-017-05646-w

[…] eight (MW), theoretical pI and grand average of hydropathicity (GRAVY) were calculated using the ProtParam tool of ExPaSy ( Myristoylaton motifs were predicted using PlantsP ( Palmitoylation and N-terminal acylation predictions were performed using CSS-Palm 3.0 and NetAcet 1.0 software, respectively. The MEME program […]


Analysis of EF Hand Proteins in Soybean Genome Suggests Their Potential Roles in Environmental and Nutritional Stress Signaling

Front Plant Sci
PMCID: 5443154
PMID: 28596783
DOI: 10.3389/fpls.2017.00877

[…] Conserved domains other than EF-hand motif were predicted using InterPro. Myristoylation sites were predicted using PlantsP. Promoter sequences of 1.5 kb upstream to the transcription start site of the genes encoding EF-hand proteins were retrieved from JBrowse, and the location of stress-related cis-acting regulat […]


Co expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum

Sci Rep
PMCID: 5138846
PMID: 27922095
DOI: 10.1038/srep38436

[…] scription factor family and kinase family classifications were predicted by the standalone program iTAK ( based on the rules from the PlnTFDB and PlantsP databases. A total of 3305 transcription factors and 1598 kinases were identified. GO was based on customized enrichment analysis in agriGO. […]


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PlantsP institution(s)
San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA, USA

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