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|Alternative name||Plant Transcription Factor Database|
|Restrictions to use||None|
|Database management system||MySQL|
|Data access||File download, Browse|
|User data submission||Not allowed|
- Documentation: http://planttfdb.cbi.pku.edu.cn/help.php
- person_outline PlantRegMap Team
Publication for Plant Transcription Factor Database
Transcriptome and Co Expression Network Analyses Identify Key Genes Regulating Nitrogen Use Efficiency in Brassica juncea L.
[…] assembled transcripts with an E-value threshold of 10−1 (http://www.nematodes.org/bioinformatics/annot8r). To derive transcription factor family related information PlnTFDB database was used (http://planttfdb.cbi.pku.edu.cn). All the unigenes were searched against this database using BLASTX with an E-value threshold of 10−5. […]
Genome Sequencing and Analysis of the Peanut B Genome Progenitor (Arachis ipaensis)
[…] ., ).To identify TFs in A. ipaensis, the PlantTFDB database was used to search TFs in other plant species (http://planttfdb.cbi.pku.edu.cn/). The predicted genes were used to BLAST search against the PlantTFDB (E-value: 1e-10). The FAR1 motif was predicted using the Multiple Expectation Maximization for Motif Elicitation (MEME)/Motif Alignment and Search Tool (MAST) system (http://meme-suite.org/) […]
An APETALA2 Homolog, RcAP2, Regulates the Number of Rose Petals Derived From Stamens and Response to Temperature Fluctuations
[…] ogenetic analyses were conducted with MEGA7 using the Neighbor-Joining method and the bootstrap consensus tree was inferred from 1000 replicates. The function prediction of transcription factor using PlantTFDB online tool, the RegRNA 2.0 online tool () was used to identifying the functional motifs and sites of RcAP2. The cis-acting element analyses were completed using online software PlantCARE () […]
Genome wide comparative and evolutionary analysis of Calmodulin binding Transcription Activator (CAMTA) family in Gossypium species
[…] s/index.jsp) and of G. raimondii from Phytozome (http://www.phytozome.net/). A total of 465 CAMTA domain sequences from 75 plant species were obtained from Plant Transcription Factor Database (http://planttfdb.cbi.pku.edu.cn/) and utilized to construct Hidden Markov Model (HMM) profile. Further, HMM profile of the CAMTA domains (CG-1, TIG domain, Ankyrin repeats, IQ) was employed as a query to ide […]
Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids
[…] To identify the transcription factors (TFs) represented in Perilla seed transcriptome, all assembled unigenes were searched against plant transcription factor database PlantTFDB (http://planttfdb.cbi.pku.edu.cn/) by BLAST with a cut-off of 1e− 5. Beased on the average of RPKM of genes across RNA-seq library replicates for a condition. Hierarchical clustering was per […]
Transcript Profiling Identifies NAC Domain Genes Involved in Regulating Wall Ingrowth Deposition in Phloem Parenchyma Transfer Cells of Arabidopsis thaliana
[…] Full-length amino acid sequences of selected transcription factors from Arabidopsis were obtained from PlantTFDB under the latest modified (July 21, 2017) version 4.0 (http://planttfdb.cbi.pku.edu.cn/index.php?sp=Ath; Jin et al., , ). These sequences were aligned using webservers of Clustal Omega (http […]
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