PlasFlow specifications


Unique identifier OMICS_26225
Name PlasFlow
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A metagenomics contig.
Input format FASTA
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Basic
Version 1.0.7
Stability Beta
Requirements Scikit-learn, Numpy, Pandas, TensorFlow, rpy2, scipy, biopython, Biostrings
Registration required No
Maintained Yes



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Publication for PlasFlow


PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures.

2018 Nucleic Acids Res
PMCID: 5887522
PMID: 29346586
DOI: 10.1093/nar/gkx1321
PlasFlow institution(s)
Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland; Department of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland
PlasFlow funding source(s)
Supported by National Science Centre [Preludium, UMO2012/05/N/NZ9/01393]; EU European Regional Development Fund; Operational Program Innovative Economy 2007–2013 [POIG.01.01.02-14-054/09-00]; European Social Fund, Human Capital Operational Program for the execution of the project ‘Support for bio tech med scientists in technology transfer’ [UDA-POKL.08.02.01- 14-041/09]; and the Polish Ministry of Science and Higher Education [POIG.02.02.00-14-024/08-00 and POIG.02.03.00-00-003/09-00].

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