PlasFlow statistics

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Associated diseases

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PlasFlow specifications

Information


Unique identifier OMICS_26225
Name PlasFlow
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A metagenomics contig.
Input format FASTA
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Basic
Version 1.1
Stability Beta
Requirements
Biostrings, biopython, python, perl, scipy, numpy, conda, bioperl, bioconda, bioc, pandas, miniconda, anaconda, plasflow, tensorflow 0.10.0 0.10.0 0.10.0, tensorflow 0.10.0 0.10.0 0.10.0 0.10.0 0.10.0, scikit-learn 0.18.1, tensorflow 0.10.0 0.10.0, tensorflow 0.10.0 0.10.0 0.10.0 0.10.0, tensorflow 0.10.0
Registration required No
Maintained Yes

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Publication for PlasFlow

library_books

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures.

2018 Nucleic Acids Res
PMCID: 5887522
PMID: 29346586
DOI: 10.1093/nar/gkx1321
PlasFlow institution(s)
Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland; Department of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland
PlasFlow funding source(s)
Supported by National Science Centre [Preludium, UMO2012/05/N/NZ9/01393]; EU European Regional Development Fund; Operational Program Innovative Economy 2007–2013 [POIG.01.01.02-14-054/09-00]; European Social Fund, Human Capital Operational Program for the execution of the project ‘Support for bio tech med scientists in technology transfer’ [UDA-POKL.08.02.01- 14-041/09]; and the Polish Ministry of Science and Higher Education [POIG.02.02.00-14-024/08-00 and POIG.02.03.00-00-003/09-00].

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