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PlasmaDNA specifications


Unique identifier OMICS_06236
Name PlasmaDNA
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes


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Publication for PlasmaDNA

PlasmaDNA in publications

PMCID: 4372654
PMID: 25853059
DOI: 10.1016/j.mgene.2015.03.001

[…] originated from scaffold 8 with bowtie2 (version 2.1.0). the sequence was annotated with the microbial genome annotation pipeline under default settings (migap; ). the plasmid map was created with plasmadna () and graphically modified., the secondary structure of orf8 and orf16 was predicted with psipred v3.3 (). kfra proteins in thiothrix nivea, methylophaga frappieri, pmcbf1 of p. putida […]

PMCID: 4261183
PMID: 25492703
DOI: 10.1038/srep07403

[…] gene editing system like crispr/cas9. this will ultimately impact cellular reprogramming strategies, cell-based therapeutics and gene therapy research., in silico plasmid design was performed using plasmadna software (university of helsinki). plasmid constructs ppb-ubc and pcmv-hypbase were acquired from wellcome trust sanger institute piggybac transposase resources (hinxton, uk). tson(gfp) […]

PMCID: 3661507
PMID: 23717601
DOI: 10.1371/journal.pone.0064342

[…] we also show the incorporation of a non-viral therapeutic transgene (human blood coagulation factor ix) in the ipscs, whose expression can be controlled by a temporal pulse of cre recombinase., plasmadna software (university of helsinki) was utilized for the in silico cloning. self-cleaving 2a-peptide-linked reprogramming factors: myc, klf-4, oct-4, sox-2 (mkos) were cloned from the addgene […]

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PlasmaDNA institution(s)
Institute of Biomedicine, University of Helsinki, Helsinki, Finland

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