PLACNET specifications

Unique identifier:
OMICS_11487
Alternative name:
PLACNETw
Interface:
Command line interface
Input data:
The input of PLACNET is a set of contigs and one or more files with the mapping of the reads against the contigs.
Output data:
A set of files, easily opened on Cytoscape software or other network tools.
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Name:
PLAsmid Constellation NETwork
Software type:
Package/Module
Restrictions to use:
None
Input format:
SAM
Biological technology:
Illumina, Life Technologies, Pacific Biosciences, Roche, Oxford Nanopore
Programming languages:
Perl
Stability:
Beta

versioning

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PLACNET distribution

download

PLACNET specifications

Unique identifier:
OMICS_11487
Alternative name:
PLACNETw
Restrictions to use:
None
Input format:
GZIP FASTA
Maintained:
Yes
Name:
PLAsmid Constellation NETwork
Interface:
Web user interface
Input data:
pair-end read datasets.
Computer skills:
Basic

PLACNET distribution

download

PLACNET support

Documentation

Maintainers

  • Ferndo de la Cruz <>
  • Luis Vielva <>
  • Ferndo de la Cruz <>
  • Luis Vielva <>

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Publications

Institution(s)

Departamento de Ingeniería de Comunicaciones, Universidad de Cantabria, Santander, Spain; Plataforma de Genómica y Bioinformática, Centro de Investigación Biomédica de La Rioja (CIBIR), Logroño, Spain; Departamento de Microbiología, Instituto de Investigación Sanitaria Ramón y Cajal (IRYCIS), Madrid, Spain; Departamento de Biología Molecular, Universidad de Cantabria and Instituto de Biomedicina y Biotecnología de Cantabria (Universidad de Cantabria- CSIC), Santander, Spain

Funding source(s)

Supported by the Spanish Ministry of Economy and Competitivity (BFU2011-26608) and the European Seventh Framework Program (612146/FP7-ICT-2013-10).

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