pMLST specifications

Information


Unique identifier OMICS_22069
Name plasmid Multilocus Sequence Typing
Interface Web user interface
Restrictions to use None
Input data A sequence in one-letter nucleotide code or in a file.
Input format FASTA
Output data The sequence type (ST) that the server associated to the dna sequence you submitted, a table containing more detailed results for each gene and allele, a summary of the setting used in the executed, result files for download and an optional graphical description of the alignment for each of the loci against the allele on the selected mlst scheme that had the best alignment score.
Biological technology Illumina, Roche
Computer skills Basic
Version 1.4
Stability Stable
Maintained Yes

Maintainer


  • person_outline Henrik Hasman <>

Additional information


https://cge.cbs.dtu.dk/services/pMLST/instructions.php

pMLST article

pMLST institution(s)
Department of Infectious, Parasitic and Immuno-Mediated Diseases, Istituto Superiore di Sanità, Rome, Italy; Danish Technical University, National Food Institute, Division for Epidemiology and Microbial Genomics, Lyngby, Denmark; Danish Technical University, Center for Biological Sequence Analysis, Department of Systems Biology, Lyngby, Denmark
pMLST funding source(s)
Supported by the Center for Genomic Epidemiology grant 09-067103/DSF, the Danish Council for Strategic Research, and the InterOmics project (PB.P05), funded by the Italian Ministry of Education, University and Research (MIUR).

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