Plasmid Profiler specifications

Information


Unique identifier OMICS_17116
Name Plasmid Profiler
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data WGS short reads in FastQ format, the supplied 91 plasmid sequence database, and the supplied but user-modifiable replicon sequence and 92 gene of interest database.
Input format FastQ
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Apache License version 2.0
Computer skills Advanced
Version 0.1.6
Stability Stable
Requirements Pandoc
Source code URL https://cran.r-project.org/src/contrib/Plasmidprofiler_0.1.6.tar.gz
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Adrian Zetner <>

Additional information


https://cran.r-project.org/web/packages/Plasmidprofiler/Plasmidprofiler.pdf

Publication for Plasmid Profiler

Plasmid Profiler institution(s)
National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada; Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, MB, Canada

Plasmid Profiler reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Plasmid Profiler