Plasmid Profiler specifications

Unique identifier:
OMICS_17116
Interface:
Command line interface
Input data:
WGS short reads in FastQ format, the supplied 91 plasmid sequence database, and the supplied but user-modifiable replicon sequence and 92 gene of interest database.
Operating system:
Unix/Linux, Mac OS, Windows
License:
Apache License version 2.0
Version:
0.1.6
Requirements:
Pandoc
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
FastQ
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Source code URL:
https://cran.r-project.org/src/contrib/Plasmidprofiler_0.1.6.tar.gz

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Plasmid Profiler distribution

download

Plasmid Profiler support

Documentation

Maintainer

  • Adrian Zetner <>

Additional information

https://cran.r-project.org/web/packages/Plasmidprofiler/Plasmidprofiler.pdf

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Publications

Institution(s)

National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada; Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, MB, Canada

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