PLATA specifications

Information


Unique identifier OMICS_23179
Name PLATA
Alternative name Probe Level Alternative Transcript Analysis
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
Requirements Numpy, Scipy, Pyrex, Pytables, Pyx, MAT
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

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Maintainers


  • person_outline Chris Burge <>
  • person_outline Rickard Sandberg <>
  • person_outline Philip Sharp <>

Publication for Probe Level Alternative Transcript Analysis

PLATA institution(s)
Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA
PLATA funding source(s)
Supported by the Knut and Alice Wallenberg Foundation; the Cancer Research Institute; the Gina De Felice and Robert M. Lefkowitz (1975) Fund; United States Public Health Service grants RO1-GM34277 from the National Institutes of Health, PO1-CA42063 and U19 AI056900 from the National Cancer Institute to PAS and partially by Cancer Center Support (core) grant P30-CA14051 from the National Cancer Institute; and by R01- HG002439 from the NHGRI.

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