PLATA statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Alternative splicing detection chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

PLATA specifications

Information


Unique identifier OMICS_23179
Name PLATA
Alternative name Probe Level Alternative Transcript Analysis
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
Numpy, Scipy, Pyrex, Pytables, Pyx, MAT
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Download


Versioning


Add your version

Maintainers


  • person_outline Chris Burge <>
  • person_outline Rickard Sandberg <>
  • person_outline Philip Sharp <>

Publication for Probe Level Alternative Transcript Analysis

PLATA in publications

 (2)
PMCID: 5445373
PMID: 28545391
DOI: 10.1186/s12859-017-1687-8

[…] a linear model to the observed data aiming to identify non-zero interaction terms between the sample groups and the exons. however, it has been argued that the anosva method performed poorly []. the probe level alternative transcript analysis (plata) method is based on the normalization of probe level intensities: first the probe-wise intensities, using gene level summarized values, […]

PMCID: 2728531
PMID: 19607685
DOI: 10.1186/gb-2009-10-7-r77

[…] non-zero interaction terms between sample groups and exons [], but this approach did not show favourable performance in the evaluations carried out by affymetrix []. recently, a procedure called plata (probe-level alternative transcript analysis) was introduced, which normalizes the expression intensities first probe-wise using the gene-level summary values and then compares the group means […]


To access a full list of publications, you will need to upgrade to our premium service.

PLATA institution(s)
Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA
PLATA funding source(s)
Supported by the Knut and Alice Wallenberg Foundation; the Cancer Research Institute; the Gina De Felice and Robert M. Lefkowitz (1975) Fund; United States Public Health Service grants RO1-GM34277 from the National Institutes of Health, PO1-CA42063 and U19 AI056900 from the National Cancer Institute to PAS and partially by Cancer Center Support (core) grant P30-CA14051 from the National Cancer Institute; and by R01- HG002439 from the NHGRI.

PLATA reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PLATA