Platanus pipeline

Platanus specifications

Information


Unique identifier OMICS_03830
Name Platanus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Platanus

Platanus citations

 (2)
2017
PMCID: 5648229

[…] using kod fx neo (toyobo, osaka, japan). paired-end (2 × 250 bp or 2 × 300 bp) sequencing was performed using miseq (illumina)., paired-end fastq files were used for de novo assembly using the platanus trimming tool-1.0.7 and platanus_assmbler-1.2.4 [20], and their quality was evaluated using quast 4.3 [21]. contig sequences including the dr region were selected from gap-closed fasta […]

2017
PMCID: 5737495

[…] assemblies, one for each species included in this stud sequence read quality filtering, de novo assembly, and genome annotation were carried out as detailed in the github repository. we used the platanus assembler (kajitani et al. 2014) because it is optimized for highly heterozygous genomes, and performed best in our hands with our data., in addition to the five de novo reference assemblies […]

Platanus institution(s)
Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Meguro-ku, Tokyo, Japan

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