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PaaS | Bioinformatics infrastructure

A Platform as a Service (PaaS) allows users to build software applications by building on software libraries or development platforms already developed by the cloud provider.

CloudMan
Desktop

CloudMan

A public Galaxy Cloud deployment on the popular Amazon Web Services (AWS)…

A public Galaxy Cloud deployment on the popular Amazon Web Services (AWS) cloud; however, it is compatible with Eucalyptus and other clouds.

BioCatalogue
Dataset

BioCatalogue

Provides an interface for registering, browsing and annotating Web Services to…

Provides an interface for registering, browsing and annotating Web Services to the Life Science community. BioCatalogue allows registration of services that are specific to the Life Sciences and more…

cl-dash
Desktop

cl-dash

A complete starter kit that allows quick setup of a Hadoop computing…

A complete starter kit that allows quick setup of a Hadoop computing environment in a cloud environment. Configuring and deploying new Hadoop clusters can be done in minutes. Use of Amazon Web…

BioServices
Desktop

BioServices

Provides programmatic access to major bioinformatics Web Services within a…

Provides programmatic access to major bioinformatics Web Services within a single Python library. BioServices gives access to around twenty Web Services including UniProt, BioModels, ChEMBL, Ensembl,…

SeqPig
Desktop

SeqPig

A library for Apache Pig for the distributed analysis of large sequencing…

A library for Apache Pig for the distributed analysis of large sequencing datasets on Hadoop clusters.

Eoulsan
Desktop

Eoulsan

A versatile framework based on the Hadoop implementation of the MapReduce…

A versatile framework based on the Hadoop implementation of the MapReduce algorithm, dedicated to high throughput sequencing data analysis on distributed computers.

BioPig
Desktop

BioPig

Allows to analyze genomic data using Apache Pig and Hadoop. BioPig is built on…

Allows to analyze genomic data using Apache Pig and Hadoop. BioPig is built on MapReduce and Hadoop and thus has both the scalability and robustness offered by Apache Hadoop, and the programmability…

Cloud BioLinux
Desktop

Cloud BioLinux

Offers genome analysis resources for cloud computing platforms such as Amazon…

Offers genome analysis resources for cloud computing platforms such as Amazon EC2.

miCloud
Desktop

miCloud

Serves for Next Generation Sequencing (NGS) data analysis. miCloud is a…

Serves for Next Generation Sequencing (NGS) data analysis. miCloud is a bioinformatics platform based on Docker virtual machine containers. It provides built-in functionality for users to run and…

jORCA
Desktop

jORCA

Ables to efficiently integrate different type of web-services repositories…

Ables to efficiently integrate different type of web-services repositories mapping metadata over a general definition to support scalable service discovery and to achieve flexible inter-communication…

MAPI
Desktop

MAPI Modular API

Provides a uniform representation of resources available over the Internet, in…

Provides a uniform representation of resources available over the Internet, in particular for Web Services. MAPI enhances their interoperability and collaborative use by enabling a uniform and remote…

Magallanes
Web
Desktop

Magallanes Multi-Architecture Resources Discovering

A versatile, platform-independent Java library of algorithms aimed at…

A versatile, platform-independent Java library of algorithms aimed at discovering bioinformatics web services and associated data types. Magallanes connects available and compatible web services into…

CloudDOE
Desktop

CloudDOE

A platform-independent software package implemented in Java. CloudDOE…

A platform-independent software package implemented in Java. CloudDOE encapsulates technical details behind a user-friendly graphical interface, thus liberating scientists from having to perform…

mORCA
Mobile

mORCA

Ables to efficiently integrate different type of web-services repositories…

Ables to efficiently integrate different type of web-services repositories mapping metadata over a general definition to support scalable service discovery and to achieve flexible inter-communication…

Arvados
Desktop

Arvados

Allows to store, organize, process, and share genomic and other big data.…

Allows to store, organize, process, and share genomic and other big data. Arvados is a platform designed to make it easier for data scientists to develop analyses, for developers to create genomic…

Cloudgene
Desktop

Cloudgene

An open source platform to improve the usability of MapReduce programs in…

An open source platform to improve the usability of MapReduce programs in Bioinformatics.

https://www.libavg.de/site/
Desktop

https://www.libavg.de/site/ libavg

Aims to develop media applications. Libavg provides a platform which allows…

Aims to develop media applications. Libavg provides a platform which allows media-centric multitouch development. The software permits to build app structure, scene graph, to update loop as well as…

Google Genomics
Desktop

Google Genomics

Helps the life science community to organize the world’s genomic information…

Helps the life science community to organize the world’s genomic information and make it accessible and useful. Google Genomics employs the same technologies that power Google Search and Maps to…

Code Ocean
Web

Code Ocean

Allows to embed a working copy of code directly into any webpage including on…

Allows to embed a working copy of code directly into any webpage including on personal site. Code Ocean is a cloud-based executable research platform. Provides public access to algorithms and…

MapReduce
Desktop

MapReduce

Processes and generates large datasets. MapReduce is a programming model and an…

Processes and generates large datasets. MapReduce is a programming model and an associated implementation that is amenable to a broad variety of real-world tasks. Users specify the computation in…

QTLaaS
Desktop

QTLaaS QTL as a service

A service for analysis of quantitative trait loci (QTL). QTLaaS automatically…

A service for analysis of quantitative trait loci (QTL). QTLaaS automatically deploys an R cluster for using PruneDIRECT algorithm, or any statistical analysis in R, over your desired infrastructure.…

Flipper
Desktop

Flipper

Can register Web services in different repositories (catalogues like BioMOBY,…

Can register Web services in different repositories (catalogues like BioMOBY, INB, etc.) and complete deployment process of the command line applications in an easy way: (i) register the service,…

SciDB
Desktop

SciDB

A massively parallel, computational database designed for scientific data…

A massively parallel, computational database designed for scientific data management and scalable, in-database analytics. Fully programmable in 'R' and Python, SciDB is designed around an…

iOMICS
Desktop

iOMICS

A unified sequence analytics software for management, analysis, interpretation…

A unified sequence analytics software for management, analysis, interpretation and sharing of NGS data and results. Developed for composite analysis needs and tested with numerous real data sets,…

Syapse
Desktop

Syapse

A platform and application suite for bringing together omics and clinical data.

A platform and application suite for bringing together omics and clinical data.

Globus Genomics
Desktop

Globus Genomics

Combines state-of-the-art algorithms, data management tools, a graphical…

Combines state-of-the-art algorithms, data management tools, a graphical workflow environment, and an elastic computing infrastructure.

Apache Hadoop
Desktop

Apache Hadoop

The project develops open-source software for reliable, scalable, distributed…

The project develops open-source software for reliable, scalable, distributed computing.

DNAnexus
Desktop

DNAnexus

Allows next-generation sequence (NGS) analysis and visualization. DNAnexus is a…

Allows next-generation sequence (NGS) analysis and visualization. DNAnexus is a cloud-based solution to manage genomic data. User can create projects, share them with other DNAnexus users at various…

Genestack
Desktop

Genestack

A universal collaborative platform for bioinformatics application development.…

A universal collaborative platform for bioinformatics application development. Import and export data into Genestack in any format. The system converts/transforms files automatically for various…

Google App…
Desktop

Google App Engine

Lets you run web applications on Google's infrastructure.

Lets you run web applications on Google's infrastructure.

Windows Azure
Desktop

Windows Azure

An open and flexible cloud platform that enables you to quickly build, deploy…

An open and flexible cloud platform that enables you to quickly build, deploy and manage applications across a global network of Microsoft-managed datacenters.

MOWServ
Web

MOWServ

Enables the secure and integrates analysis of data and straightforward access…

Enables the secure and integrates analysis of data and straightforward access to databases, services and computational resources. MOWServ was released to provide integrated access to databases and…

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