Platypus pipeline

Platypus specifications

Information


Unique identifier OMICS_00068
Name Platypus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, Cython, Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Platypus

Platypus citation

2015
PMCID: 4819766

[…] in at least 30 × sequence coverage. individual genotypes in the form of variant call format files were generated by aligning the short reads to grch37 using stampy13 and variants were called using platypus.14 all variants were annotated using the variant effect predictor developed by ensembl.15, table 1 summarises the analyses that were conducted., to identify common genetic variants (minor […]

Platypus institution(s)
Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK; Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford, UK; Department of Statistics, University of Oxford, Oxford, UK

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