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PLEXdb specifications

Information


Unique identifier OMICS_03225
Name PLEXdb
Alternative name PLant EXpression database
Restrictions to use None
Maintained Yes

Publication for PLant EXpression database

PLEXdb citations

 (52)
library_books

Novel Ribonuclease Activity Differs between Fibrillarins from Arabidopsis thaliana

2017
Front Plant Sci
PMCID: 5674935
PMID: 29163603
DOI: 10.3389/fpls.2017.01878

[…] b proteins in Figure was taken from . Treatment descriptions and gene expression information can be inspected in TA°IR (accession: ExpressionSet: 1006710873), and also can be inspected in http://www.PLEXdb.org (accession: AT40). The heatmap in Figure was generated by using the ComplexHeatmap package () from Bioconductor project (). Structural studies of Arabidopsis fibrillarins were modeled on t […]

library_books

Comparative Genomics of Non TNL Disease Resistance Genes from Six Plant Species

2017
Genes
PMCID: 5664099
PMID: 28973974
DOI: 10.3390/genes8100249

[…] each of the six species. Average Ka/Ks ratios for each subclade were determined using coding sequences.Gene expression data are available for Arabidopsis, Glycine, Medicago, Oryza, and Populus at the PlexDB site [] and are not uniform in their experimental design. Only data with common themes such as time after inoculation between 12 and 72 h were selected, and each plant was challenged by at leas […]

library_books

RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement

2017
BMC Bioinformatics
PMCID: 5622590
PMID: 28964253
DOI: 10.1186/s12859-017-1846-y

[…] e in the public domain. In rice, using the microarray data, several publically accessible databases like OryzaExpress ([], http://plantomics.mind.meiji.ac.jp/OryzaExpress/ ), RicePLEX ([], http://www.plexdb.org/plex.php?database=Rice ), Rice Oligonucleotide Array database (ROAD) [], RiceSRTFDB ([], http://www.nipgr.res.in/RiceSRTFDB.html ), Oryzabase ([], http://shigen.nig.ac.jp/rice/oryzabase/ ), […]

call_split

A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection

2017
Mol Plant Pathol
PMCID: 5697668
PMID: 28466509
DOI: 10.1111/mpp.12564
call_split See protocol

[…] s across the four F. graminearum chromosomes was displayed using the software OmniMapFree (Antoniw et al., ).For comparison, existing F. graminearum–wheat Affymetrix datasets were downloaded from www.plexdb.org, including the in vitro complete medium, carbon and nitrogen starvation comparison (FG2), the whole wheat head time course experiment (FG15) and the wheat coleoptile LCM study (FG19). Genom […]

library_books

Molecular Characterization, Gene Evolution, and Expression Analysis of the Fructose 1, 6 bisphosphate Aldolase (FBA) Gene Family in Wheat (Triticum aestivum L.)

2017
Front Plant Sci
PMCID: 5470051
PMID: 28659962
DOI: 10.3389/fpls.2017.01030

[…] The expression profiles of different tissues and developmental stages were downloaded from the WheatExp database and PLEXdb database respectively, and the corresponding probe ID of the TaFBA genes are shown in Table . Combined with the results of Genevestigator, we analyzed the spatiotemporal expression profiles of […]

library_books

Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat

2017
BMC Plant Biol
PMCID: 5450219
PMID: 28558686
DOI: 10.1186/s12870-017-1038-y

[…] used the pheatmap tool in R to draw a heat map of bHLH family gene expression levels in wheat. Finally, bHLH TF expression data were obtained by combining GeneChip and expression profiling data from PLEXdb (http://www.plexdb.org/index.php). […]

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PLEXdb institution(s)
Virtual Reality Application Center, Crop Genome Informatics Lab, Electrical and Computer Engineering, Bioinformatics and Computational Biology, Iowa State University, Ames, IA, USA

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