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PLINK

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A free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.

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1 user review

1 user review

karl Forner's avatar image

karl Forner

Most comprehensive and efficient GWAS toolkit.

PLINK forum

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PLINK classification

PLINK specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Version:
1.9
Maintained:
Yes
Interface:
Command line interface
Input data:
Raw genotypes
Computer skills:
Advanced
Stability:
Stable

PLINK distribution

versioning

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No versioning.

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PLINK support

Maintainer

  • Shaun Purcell <>

Credits

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Publications

Institution(s)

Center for Human Genetic Research, Massachusetts General Hospital, Boston, MA, USA

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