plmDCA specifications


Unique identifier OMICS_13943
Name plmDCA
Alternative name pseudolikelihood maximization Direct-Coupling Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Multiple Sequence Alignment
Output data Scores for pairwise (direct) interactions
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


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Publications for pseudolikelihood maximization Direct-Coupling Analysis

plmDCA institution(s)
Engineering Physics Program, KTH Royal Institute of Technology, Stockholm, Sweden; Department of Computational Biology, AlbaNova University Centre, Stockholm, Sweden; Department of Information and Computer Science, Aalto University, Aalto, Finland; The Master’s Degree Programme in Translational Medicine, Biomedicum Helsinki, University of Helsinki, Finland; Aalto Science Institute, Aalto, Finland
plmDCA funding source(s)
This work was supported by the COIN (Centre of Excellence in Computational Inference), Academy of Finland (grant number 251170), and through the Finland Distinguished Professorship program, project 129024/Aurell.

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