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Citations per year

Number of citations per year for the bioinformatics software tool PLMLA
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PLMLA specifications

Information


Unique identifier OMICS_18512
Name PLMLA
Interface Web user interface
Restrictions to use None
Input data One or multiple human or other species protein sequences.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained No

Maintainer


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Publication for PLMLA

PLMLA citations

 (4)
library_books

Discriminating between Lysine Sumoylation and Lysine Acetylation Using mRMR Feature Selection and Analysis

2014
PLoS One
PMCID: 4164654
PMID: 25222670
DOI: 10.1371/journal.pone.0107464

[…] that the most important sites in determining whether a peptide would be sumoylated were the 7th, 4th, 1st, 2nd, and 3rd sites . Shi et al. used −6∼+6 region surrounding the center lysine to develop PLMLA to predict acetylated lysine residues. Gnad et al. used 2 to 8 amino acids upstream and downstream of the center lysine to predict acetylation sites. It has been shown in structural studies tha […]

library_books

Evidence supporting the existence of a NUPR1 like family of helix loop helix chromatin proteins related to, yet distinct from, AT hook containing HMG proteins

2014
J Mol Model
PMCID: 4139591
PMID: 25056123
DOI: 10.1007/s00894-014-2357-7

[…] VM [], Scansite [], Musite [], PPSP [], and GPS 2.0 []. Additionally, 3D phosphorylation prediction was performed using Phos3D []. Acetylation sites were predicted using PAIL [], PREDMOD [], ASEB [], PLMLA [], PSKAcePred [], BRABSB-PHKA [], LysAcet [], and EnsemblePail []. Methylation sites were predicted using PMeS [], BPB-PPMS [], PLMLA [], and CKSAAP MetSite []. Sumoylation sites were predicted […]

library_books

Accurate in silico identification of species specific acetylation sites by integrating protein sequence derived and functional features

2014
Sci Rep
PMCID: 4104576
PMID: 25042424
DOI: 10.1038/srep05765

[…] Both 5-fold cross-validation and independent tests were conducted to compare the performance of our method with other previously published methods, including Phosida, BRABSB, PLMLA, LysAcet, ensemblePail and PSKAcePred. Phosida and PSKAcePred used the binary encoding features of amino acids as input features of the model. BRABSB was a SVM-based human-specific lysine acetyl […]

library_books

Uncovering the Protein Lysine and Arginine Methylation Network in Arabidopsis Chloroplasts

2014
PLoS One
PMCID: 3991674
PMID: 24748391
DOI: 10.1371/journal.pone.0095512

[…] wing predictors for searching Lys and Arg methylation sites: MeMo v2.0 , BPB-PPMS (http://www.bioinfo.bio.cuhk.edu.hk/bpbppms/index.jsp) , MASA (http://masa.mbc. nctu. edu.tw/index.html) , PMeS , and PLMLA (http://bioinfo.ncu.edu.cn/inquiries _PLMLA. aspx) . […]


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PLMLA institution(s)
Department of Chemistry, Nanchang University, Nanchang, China; Department of Mathematics, Nanchang University, Nanchang, China
PLMLA funding source(s)
Supported by grants from the National Natural Science Foundation of China (21175064, 21163014 and 21065006).

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