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Protocols

PluMiST specifications

Information


Unique identifier OMICS_13102
Name PluMiST
Alternative name Plus and Minus SuperTrees
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Phylogenic trees
Output data Supertree
Output format TREE, START, STRICT, PROG
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Anne Kupczok

Publication for Plus and Minus SuperTrees

PluMiST citation

call_split

FastRFS: fast and accurate Robinson Foulds Supertrees using constrained exact optimization

2016
Bioinformatics
PMCID: 5870905
PMID: 27663499
DOI: 10.1093/bioinformatics/btw600
call_split See protocol

[…] In addition to the two FastRFS variants (basic and enhanced), we computed supertrees using MRL, ASTRID, ASTRAL-2, MulRF and PluMiST. For MRL, we compute the MRP matrix using ‘mrpmatrix’ available at github.com/smirarab/mrpmatrix, and we use RAxML () version 8.2.4 under the BINGAMMA model with seed 12345 on the MRP matrix. […]


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