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Associated diseases

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pMatch specifications

Information


Unique identifier OMICS_22347
Name pMatch
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages C++
Computer skills Advanced
Version 1.5
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Yan Fu <>
  • person_outline Rui-Xiang Sun <>
  • person_outline Ding Ye <>

Publication for pMatch

pMatch in publications

 (21)
PMCID: 5712829
PMID: 29135956
DOI: 10.3390/s17112619

[…] maximum values. it can also be found that, during the time period 100–300 s, φ>10∘, the horizontal distance estimation results are relatively stable. next, the p is scanned with the range of pmatch = 1–5000 m, and v^ is evaluated using the improved algorithm shown by (24). each of the estimated v^match expression corresponding to pmatch is: v^match= v^(100:300)¯. the pmatch corresponding […]

PMCID: 5450854
PMID: 28537227
DOI: 10.12659/MSM.902109

[…] using spss (version 16.0; spss inc., chicago, illinois, usa) and adjusted for age, sex, and bmi., p-match is a kind of functional prediction tool (http://www.gene-regulation.com/cgi-bin/pub/programs/pmatch/bin/pmatch.cgi), which is used to predict the effects of polymorphisms on the sequence structures of potential binding sites for transcription factors (tfs). this software is involved […]

PMCID: 5470612
PMID: 28680329
DOI: 10.5114/ceji.2017.67316

[…] at present, there have been few studies on the regulation of mir-20b expression. we used two bioinformatics software packages, p-match 1.0 (http://www.gene-regulation.com/cgi-bin/pub/programs/pmatch/bin/p-match.cgi) and alibaba2 (http://www.gene-regulation.com/pub/programs/alibaba2/index.html), to predict the transcription factors that might be involved in the regulation of mir-20b […]

PMCID: 5522240
PMID: 28489573
DOI: 10.18632/oncotarget.17248

[…] transcription factor binding sites were predicted using the jaspar network tool software (http://jaspar.genereg.net/) and p-match network platform (http://www.gene-regulation.com/pub/programs.html#pmatch). to construct p27 promoter associated plasmids, the polymerase chain reaction (pcr) primers were designed (table ). genomic dna was extracted from lx-2 cells according to instructions […]

PMCID: 5100282
PMID: 27821049
DOI: 10.1186/s12859-016-1301-5

[…] with ptm based on the modification of the spectra from spectral libraries. notably, these methods are able to identify both specific and potential ptms (so-called blind ptm search). among these are pmatch [] and tier-wise scoring [] methods. these algorithms have not been tested on a large number of peptides with saps yet., in this paper we describe sap identification method based […]


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pMatch institution(s)
Institute of Computing Technology and Key Lab of Intelligent Information Processing, Chinese Academy of Sciences, Beijing, China; Graduate University of Chinese Academy of Sciences, Beijing, China
pMatch funding source(s)
Supported by the National Natural Science Foundation of China under grant no. 30900262; the CAS Knowledge Innovation Program under grant no. KGGX1-YW-13; the National Key Basic Research and Development Program (973) of China under grant no. 2010CB912701; and the National High Technology Research and Development Program (863) of China under grant nos.2007AA02Z315, 2008AA02Z309.

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