pMatch statistics

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Citations per year

Number of citations per year for the bioinformatics software tool pMatch
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Tool usage distribution map

This map represents all the scientific publications referring to pMatch per scientific context
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pMatch specifications

Information


Unique identifier OMICS_22347
Name pMatch
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages C++
Computer skills Advanced
Version 1.5
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Yan Fu
  • person_outline Rui-Xiang Sun
  • person_outline Ding Ye

Publication for pMatch

pMatch citations

 (26)
library_books

An Improved Aerial Target Localization Method with a Single Vector Sensor

2017
PMCID: 5712829
PMID: 29135956
DOI: 10.3390/s17112619

[…] alculate maximum values. It can also be found that, during the time period 100–300 s, φ>10∘, the horizontal distance estimation results are relatively stable. Next, the p is scanned with the range of pmatch = 1–5000 m, and v^ is evaluated using the improved algorithm shown by (24). Each of the estimated v^match expression corresponding to pmatch is: v^match= v^(100:300)¯. The pmatch corresponding […]

library_books

Association of CYP17A1 Genetic Polymorphisms and Susceptibility to Essential Hypertension in the Southwest Han Chinese Population

2017
PMCID: 5450854
PMID: 28537227
DOI: 10.12659/MSM.902109

[…] P-match is a kind of functional prediction tool (http://www.gene-regulation.com/cgi-bin/pub/programs/pmatch/bin/pmatch.cgi), which is used to predict the effects of polymorphisms on the sequence structures of potential binding sites for transcription factors (TFs). This software is involved with a li […]

library_books

MicroRNA 20b promotes the accumulation of CD11b+Ly6G+Ly6Clow myeloid derived suppressor cells in asthmatic mice

2017
PMCID: 5470612
PMID: 28680329
DOI: 10.5114/ceji.2017.67316

[…] At present, there have been few studies on the regulation of miR-20b expression. We used two bioinformatics software packages, P-MATCH 1.0 (http://www.gene-regulation.com/cgi-bin/pub/programs/pmatch/bin/p-match.cgi) and AliBaba2 (http://www.gene-regulation.com/pub/programs/alibaba2/index.html), to predict the transcription factors that might be involved in the regulation of miR-20b express […]

library_books

Recombinant SjP40 protein enhances p27 promoter expression in hepatic stellate cells via an E2F1 dependent mechanism

2017
Oncotarget
PMCID: 5522240
PMID: 28489573
DOI: 10.18632/oncotarget.17248

[…] ). Transcription factor binding sites were predicted using the JASPAR network tool software (http://jaspar.genereg.net/) and p-match network platform (http://www.gene-regulation.com/pub/programs.html#pmatch). To construct p27 promoter associated plasmids, the polymerase chain reaction (PCR) primers were designed (Table ). Genomic DNA was extracted from LX-2 cells according to instructions for the […]

library_books

Large scale analysis of amino acid substitutions in bacterial proteomics

2016
BMC Bioinformatics
PMCID: 5100282
PMID: 27821049
DOI: 10.1186/s12859-016-1301-5

[…] S/MS spectra of strains A45, J99 and 26695 for speptide and pMatch and a database of the sequences of all identified peptides of these strains for Byonic and SPIDER. Two of the algorithms (Byonic and pMatch) are intended for PTM search, so the results were post-processed. During the post-processing, only the mass shifts in parent mass, that could be explained by amino acid changes were selected. T […]

library_books

Novel multispecific heterodimeric antibody format allowing modular assembly of variable domain fragments

2016
MAbs
PMCID: 5240654
PMID: 27786600
DOI: 10.1080/19420862.2016.1248012

[…] and CODV-Ig (antiparallel MATCH) formats. Figure 6. Combining a selection of 4 rabbit antibodies humanized with a λcapped Vκ1/VH3 Fv scaffold, we applied our MATCH concept to generate both parallel (pMATCH) and antiparallel (apMATCH) tetraspecific heterodimers in a proof-of-concept study with therapeutically-nonsensical specificities for human TNFα, CD3ε, IL-5R, and IL-23R (). In pMATCH, we inclu […]


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pMatch institution(s)
Institute of Computing Technology and Key Lab of Intelligent Information Processing, Chinese Academy of Sciences, Beijing, China; Graduate University of Chinese Academy of Sciences, Beijing, China
pMatch funding source(s)
Supported by the National Natural Science Foundation of China under grant no. 30900262; the CAS Knowledge Innovation Program under grant no. KGGX1-YW-13; the National Key Basic Research and Development Program (973) of China under grant no. 2010CB912701; and the National High Technology Research and Development Program (863) of China under grant nos.2007AA02Z315, 2008AA02Z309.

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