Protocols

PmiRExAt specifications

Information


Unique identifier OMICS_11492
Name PmiRExAt
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse, Application programming interface
User data submission Not allowed
Version 1.1
Maintained No

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa
    • Triticum aestivum
    • Zea mays

Publication for PmiRExAt

PmiRExAt citation

call_split

Response of microRNAs to cold treatment in the young spikes of common wheat

2017
BMC Genomics
PMCID: 5330121
PMID: 28241738
DOI: 10.1186/s12864-017-3556-2
call_split See protocol

[…] s known miRNAs by the BLAST search against the miRBase 21 database with at most two mismatches (http://www.mirbase.org/), and the wheat microRNAs from PNRD (http://structuralbiology.cau.edu.cn/PNRD), PmiRExAt (http://pmirexat.nabi.res.in/), and IWGSC miRNA dataset [] with the perfect match. After the removal of the known small RNAs and repeat-associated small RNAs, we used the miRdeep-P program wi […]

PmiRExAt institution(s)
Computational Biology Laboratory, National Agri Food Biotechnology Institute (NABI), Mohali, Punjab, India; HPC-Tech, Center for Development of Advance Computing (C-DAC), Pune, Maharashtra, India
PmiRExAt funding source(s)
This work was financially supported by the core grant of National Agri-Food Biotechnology Institute (NABI), Mohali, India an autonomous institute of Department of Biotechnology, Government of India.

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