Protocols
PmiRExAt specifications
Information
| Unique identifier | OMICS_11492 |
|---|---|
| Name | PmiRExAt |
| Restrictions to use | None |
| Database management system | MySQL |
| Community driven | No |
| Data access | File download, Browse, Application programming interface |
| User data submission | Not allowed |
| Version | 1.1 |
| Maintained | No |
Taxon
-
Plants and Fungi
- Arabidopsis thaliana
- Oryza sativa
- Triticum aestivum
- Zea mays
Publication for PmiRExAt
2016
PMCID: 4830907
PMID: 27081157
DOI: 10.1093/database/baw060
PmiRExAt citation
call_split
Response of microRNAs to cold treatment in the young spikes of common wheat
2017
BMC Genomics
PMCID: 5330121
PMID: 28241738
DOI: 10.1186/s12864-017-3556-2
call_split See protocol
[…] s known miRNAs by the BLAST search against the miRBase 21 database with at most two mismatches (http://www.mirbase.org/), and the wheat microRNAs from PNRD (http://structuralbiology.cau.edu.cn/PNRD), PmiRExAt (http://pmirexat.nabi.res.in/), and IWGSC miRNA dataset [] with the perfect match. After the removal of the known small RNAs and repeat-associated small RNAs, we used the miRdeep-P program wi […]
PmiRExAt institution(s)
Computational Biology Laboratory, National Agri Food Biotechnology Institute (NABI), Mohali, Punjab, India; HPC-Tech, Center for Development of Advance Computing (C-DAC), Pune, Maharashtra, India
PmiRExAt funding source(s)
This work was financially supported by the core grant of National Agri-Food Biotechnology Institute (NABI), Mohali, India an autonomous institute of Department of Biotechnology, Government of India.
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